Wall clock time and date at job start Mon Mar 30 2020 03:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.50407 * 2 1 4 4 C 1.53161 * 109.50530 * 120.08589 * 2 1 3 5 5 C 1.53305 * 109.48910 * 189.16169 * 4 2 1 6 6 N 1.46301 * 108.77291 * 309.87696 * 5 4 2 7 7 N 1.39764 * 128.31012 * 197.06559 * 6 5 4 8 8 C 1.30974 * 106.58053 * 179.90668 * 7 6 5 9 9 C 1.50703 * 125.49664 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 90.02348 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 N 1.33469 * 109.00889 * 0.26302 * 8 7 6 19 19 C 1.30331 * 109.72218 * 359.60455 * 18 8 7 20 20 C 1.50931 * 127.90202 * 180.02562 * 19 18 8 21 21 H 1.08992 * 109.47273 * 299.91326 * 1 2 3 22 22 H 1.09004 * 109.46815 * 59.91833 * 1 2 3 23 23 H 1.09000 * 109.46871 * 179.91024 * 1 2 3 24 24 H 1.08995 * 109.47097 * 69.15409 * 4 2 1 25 25 H 1.08998 * 109.46343 * 309.15970 * 4 2 1 26 26 H 1.09001 * 109.58131 * 190.09382 * 5 4 2 27 27 H 1.08995 * 109.70820 * 69.73329 * 5 4 2 28 28 H 1.09002 * 109.47152 * 330.02441 * 9 8 7 29 29 H 1.09001 * 109.46980 * 210.02541 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.08992 * 109.72015 * 76.61269 * 20 19 18 32 32 H 1.09002 * 109.75468 * 315.97914 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0414 -0.7237 1.2492 5 6 3.5571 -0.5275 1.3695 6 7 4.1783 -0.8616 0.0878 7 7 5.5217 -1.1421 -0.1770 8 6 5.6066 -1.3853 -1.4611 9 6 6.8702 -1.7364 -2.2035 10 6 7.0522 -3.2324 -2.2061 11 1 6.3253 -3.8656 -1.7192 12 6 8.1462 -3.7927 -2.8309 13 7 9.0310 -3.0216 -3.4242 14 14 8.3713 -5.6471 -2.8346 15 1 7.2097 -6.2855 -3.5044 16 1 9.6165 -5.9930 -3.5661 17 1 8.4670 -6.1370 -1.4360 18 7 4.3947 -1.2660 -2.0073 19 6 3.5259 -0.9561 -1.0866 20 6 2.0435 -0.7246 -1.2508 21 1 -0.3633 0.5124 0.8907 22 1 -0.3633 0.5151 -0.8893 23 1 -0.3633 -1.0277 -0.0016 24 1 1.8180 -1.7876 1.1698 25 1 1.5509 -0.3145 2.1324 26 1 3.9496 -1.1823 2.1475 27 1 3.7745 0.5104 1.6214 28 1 7.7227 -1.2675 -1.7119 29 1 6.8001 -1.3771 -3.2302 30 1 9.8008 -3.4159 -3.8634 31 1 1.5315 -1.6808 -1.3576 32 1 1.8621 -0.1098 -2.1325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:12 Heat of formation + Delta-G solvation = 64.177530 kcal Electronic energy + Delta-G solvation = -14722.355215 eV Core-core repulsion = 12297.796141 eV Total energy + Delta-G solvation = -2424.559073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59249 -37.48628 -33.56075 -32.93267 -31.15385 -29.65785 -28.25303 -26.58862 -23.91662 -23.02846 -21.38034 -19.50306 -19.12653 -16.36650 -16.31591 -15.58234 -14.85402 -14.55717 -14.45040 -14.08880 -13.62609 -12.77958 -12.57499 -12.38700 -12.01006 -11.71226 -11.56511 -11.41063 -11.10569 -10.97929 -10.73920 -10.61426 -10.53782 -9.87523 -9.50038 -9.15771 -8.97691 -8.35833 -8.35302 -5.98457 -4.00161 2.32551 2.90286 3.38812 3.41208 3.44944 3.83450 4.26098 4.39171 4.47616 4.51865 4.57695 5.07065 5.15016 5.23057 5.37598 5.39321 5.46681 5.47434 5.59674 5.65494 5.76029 5.83363 5.86558 6.06761 6.13016 7.18582 7.26757 7.42963 7.62383 7.66437 7.96926 8.33966 8.99952 9.05413 9.61439 11.12681 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052181 B = 0.006051 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.460383 B = 4626.574870 C = 4658.290831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.131 4.131 5 C 0.133 3.867 6 N -0.396 5.396 7 N -0.331 5.331 8 C 0.266 3.734 9 C 0.104 3.896 10 C -0.505 4.505 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 N -0.535 5.535 19 C 0.254 3.746 20 C -0.031 4.031 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.263 0.737 31 H 0.093 0.907 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.773 6.316 8.603 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.169 4.169 5 C 0.010 3.990 6 N -0.188 5.188 7 N -0.158 5.158 8 C -0.014 4.014 9 C 0.064 3.936 10 C -0.545 4.545 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.203 1.203 18 N -0.262 5.262 19 C -0.023 4.023 20 C -0.071 4.071 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.061 6.278 8.745 19.336 hybrid contribution 0.023 -0.994 0.182 1.011 sum -16.039 5.284 8.927 19.101 Atomic orbital electron populations 1.21787 0.93763 1.02340 1.02199 1.21293 0.96582 0.99971 0.93884 0.90309 1.22042 0.93404 1.02306 0.99168 1.21619 0.92196 1.01691 0.83528 1.50225 1.06379 1.54174 1.08046 1.78042 0.92632 1.27034 1.18046 1.25504 0.95310 0.92623 0.87980 1.17781 0.84142 0.97271 0.94379 1.20835 1.07956 0.90457 1.35224 0.92805 1.24934 0.95613 0.98407 0.95173 1.69939 1.12351 1.35084 1.35977 0.86524 0.77402 0.85156 0.78144 1.20162 1.21122 1.20269 1.70247 1.00349 1.23621 1.32007 1.24160 0.96752 0.98426 0.82942 1.20313 0.85390 1.02305 0.99113 0.92259 0.92051 0.92225 0.90561 0.89147 0.89305 0.90282 0.93937 0.93415 0.92708 0.88874 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 2 C -0.10 -0.88 2.74 -90.33 -0.25 -1.13 16 3 H 0.08 0.72 8.12 -51.92 -0.42 0.30 16 4 C -0.13 -1.17 5.25 -26.49 -0.14 -1.31 16 5 C 0.13 1.67 7.30 -3.99 -0.03 1.64 16 6 N -0.40 -7.47 4.04 -58.29 -0.24 -7.70 16 7 N -0.33 -7.99 12.74 32.50 0.41 -7.58 16 8 C 0.27 6.91 7.34 -156.43 -1.15 5.77 16 9 C 0.10 2.96 5.60 -29.03 -0.16 2.80 16 10 C -0.51 -15.24 9.09 -34.44 -0.31 -15.56 16 11 H 0.05 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 14 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 N -0.53 -12.72 11.18 -8.03 -0.09 -12.81 16 19 C 0.25 4.78 7.72 -155.78 -1.20 3.58 16 20 C -0.03 -0.39 5.64 -27.56 -0.16 -0.54 16 21 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.04 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 271.08 15.07 4.09 4.09 Total: -1.00 -35.02 271.08 -7.87 -42.90 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -4.61 Total: -6.18 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.15 Total: -3.66 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.83 Total: -54.60 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -35.02 -7.87 -42.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.073 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds