Wall clock time and date at job start Mon Mar 30 2020 03:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.50407 * 2 1 4 4 C 1.53161 * 109.50530 * 120.08589 * 2 1 3 5 5 C 1.53305 * 109.48910 * 189.16169 * 4 2 1 6 6 N 1.46301 * 108.77291 * 309.87696 * 5 4 2 7 7 N 1.39764 * 128.31012 * 197.06559 * 6 5 4 8 8 C 1.30974 * 106.58053 * 179.90668 * 7 6 5 9 9 C 1.50703 * 125.49664 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 90.02348 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 N 1.33469 * 109.00889 * 0.26302 * 8 7 6 19 19 C 1.30331 * 109.72218 * 359.60455 * 18 8 7 20 20 C 1.50931 * 127.90202 * 180.02562 * 19 18 8 21 21 H 1.08992 * 109.47273 * 299.91326 * 1 2 3 22 22 H 1.09004 * 109.46815 * 59.91833 * 1 2 3 23 23 H 1.09000 * 109.46871 * 179.91024 * 1 2 3 24 24 H 1.08995 * 109.47097 * 69.15409 * 4 2 1 25 25 H 1.08998 * 109.46343 * 309.15970 * 4 2 1 26 26 H 1.09001 * 109.58131 * 190.09382 * 5 4 2 27 27 H 1.08995 * 109.70820 * 69.73329 * 5 4 2 28 28 H 1.09002 * 109.47152 * 330.02441 * 9 8 7 29 29 H 1.09001 * 109.46980 * 210.02541 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.08992 * 109.72015 * 76.61269 * 20 19 18 32 32 H 1.09002 * 109.75468 * 315.97914 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0414 -0.7237 1.2492 5 6 3.5571 -0.5275 1.3695 6 7 4.1783 -0.8616 0.0878 7 7 5.5217 -1.1421 -0.1770 8 6 5.6066 -1.3853 -1.4611 9 6 6.8702 -1.7364 -2.2035 10 6 7.0522 -3.2324 -2.2061 11 1 6.3253 -3.8656 -1.7192 12 6 8.1462 -3.7927 -2.8309 13 7 9.0310 -3.0216 -3.4242 14 14 8.3713 -5.6471 -2.8346 15 1 7.2097 -6.2855 -3.5044 16 1 9.6165 -5.9930 -3.5661 17 1 8.4670 -6.1370 -1.4360 18 7 4.3947 -1.2660 -2.0073 19 6 3.5259 -0.9561 -1.0866 20 6 2.0435 -0.7246 -1.2508 21 1 -0.3633 0.5124 0.8907 22 1 -0.3633 0.5151 -0.8893 23 1 -0.3633 -1.0277 -0.0016 24 1 1.8180 -1.7876 1.1698 25 1 1.5509 -0.3145 2.1324 26 1 3.9496 -1.1823 2.1475 27 1 3.7745 0.5104 1.6214 28 1 7.7227 -1.2675 -1.7119 29 1 6.8001 -1.3771 -3.2302 30 1 9.8008 -3.4159 -3.8634 31 1 1.5315 -1.6808 -1.3576 32 1 1.8621 -0.1098 -2.1325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:12 Heat of formation + Delta-G solvation = 41.041953 kcal Electronic energy + Delta-G solvation = -14723.358449 eV Core-core repulsion = 12297.796141 eV Total energy + Delta-G solvation = -2425.562307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.19092 -38.50891 -35.50574 -34.46785 -32.83275 -31.09609 -29.88640 -27.74228 -25.71671 -24.43147 -22.49005 -21.29188 -20.22985 -18.64372 -17.67230 -16.98394 -16.58621 -15.90510 -15.50096 -15.20676 -14.83365 -14.34255 -14.23795 -13.60072 -13.30697 -13.19661 -12.96685 -12.76555 -12.64043 -12.49930 -12.01235 -11.97091 -11.69100 -11.65751 -11.55566 -10.92460 -10.64967 -10.61214 -10.07989 -8.25957 -6.38676 0.72622 1.37422 1.42361 1.50232 1.54836 2.01016 2.41328 3.04006 3.11107 3.44564 3.66893 3.69139 4.05220 4.17818 4.25711 4.37001 4.58528 4.68251 4.73745 4.85653 4.88269 5.00417 5.12647 5.15890 5.30134 5.35635 5.47126 5.50318 5.57559 5.64075 6.04439 6.09599 6.65984 7.28137 7.31920 8.85683 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052181 B = 0.006051 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.460383 B = 4626.574870 C = 4658.290831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.122 4.122 5 C 0.115 3.885 6 N -0.388 5.388 7 N -0.360 5.360 8 C 0.240 3.760 9 C 0.115 3.885 10 C -0.531 4.531 11 H 0.043 0.957 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.975 3.025 15 H -0.268 1.268 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.578 5.578 19 C 0.263 3.737 20 C -0.032 4.032 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.018 0.982 29 H 0.023 0.977 30 H 0.270 0.730 31 H 0.109 0.891 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.332 5.879 10.013 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.005 4.005 6 N -0.180 5.180 7 N -0.188 5.188 8 C -0.041 4.041 9 C 0.075 3.925 10 C -0.570 4.570 11 H 0.061 0.939 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.798 3.202 15 H -0.193 1.193 16 H -0.195 1.195 17 H -0.195 1.195 18 N -0.307 5.307 19 C -0.013 4.013 20 C -0.072 4.072 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.650 5.864 10.189 22.046 hybrid contribution 0.744 -0.759 -0.179 1.078 sum -17.906 5.106 10.010 21.140 Atomic orbital electron populations 1.21745 0.91151 1.03077 1.03434 1.21302 0.98473 0.99360 0.91874 0.90129 1.22114 0.90293 1.02619 1.00939 1.22282 0.94525 1.02867 0.80838 1.50555 1.04531 1.52655 1.10304 1.77828 0.96372 1.27444 1.17194 1.24879 0.95426 0.95006 0.88789 1.17369 0.85267 0.96676 0.93156 1.21015 1.08554 0.91165 1.36273 0.93881 1.25900 0.94785 1.04045 0.94107 1.70052 1.12756 1.37517 1.36051 0.85369 0.78011 0.78203 0.78622 1.19312 1.19516 1.19473 1.70123 1.00335 1.25949 1.34335 1.25256 0.98677 0.95518 0.81860 1.20731 0.80858 1.03873 1.01710 0.90368 0.91582 0.91741 0.90740 0.84968 0.88878 0.88386 0.96348 0.95896 0.92073 0.87337 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.17 71.98 0.66 -0.47 16 2 C -0.09 -1.29 2.74 -10.60 -0.03 -1.32 16 3 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 4 C -0.12 -1.68 5.25 30.75 0.16 -1.52 16 5 C 0.12 2.63 7.30 86.52 0.63 3.26 16 6 N -0.39 -14.49 4.04 -338.33 -1.37 -15.86 16 7 N -0.36 -17.96 12.74 -51.08 -0.65 -18.61 16 8 C 0.24 13.11 7.34 138.48 1.02 14.13 16 9 C 0.11 7.00 5.60 29.10 0.16 7.17 16 10 C -0.53 -33.41 9.09 25.60 0.23 -33.18 16 11 H 0.04 2.73 7.74 -2.91 -0.02 2.70 16 12 C 0.01 0.64 5.46 84.66 0.46 1.11 16 13 N -0.92 -57.78 13.29 21.45 0.28 -57.49 16 14 Si 0.97 46.52 29.54 68.60 2.03 48.54 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 N -0.58 -28.43 11.18 -179.31 -2.01 -30.44 16 19 C 0.26 9.81 7.72 138.37 1.07 10.87 16 20 C -0.03 -0.72 5.64 30.06 0.17 -0.55 16 21 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 22 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 25 H 0.13 0.84 8.12 -2.39 -0.02 0.82 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.02 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.11 2.15 8.11 -2.39 -0.02 2.14 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -80.33 271.08 3.92 -76.41 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: 1.09 Total: -2.06 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 4.54 Total: -0.50 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -3.74 Total: -122.40 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.33 3.92 -76.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.454 kcal (2) G-P(sol) polarization free energy of solvation -80.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds