Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 126.46689 * 2 1 4 4 N 1.28906 * 109.74447 * 180.02562 * 3 2 1 5 5 C 1.29844 * 109.47701 * 0.02562 * 4 3 2 6 6 N 1.34696 * 126.46632 * 179.97438 * 2 1 3 7 7 C 1.46261 * 128.84316 * 359.90422 * 6 2 1 8 8 C 1.53319 * 108.72098 * 197.12446 * 7 6 2 9 9 H 1.08999 * 109.45417 * 69.72526 * 8 7 6 10 10 C 1.52999 * 109.45261 * 189.65407 * 8 7 6 11 11 C 1.50697 * 109.47499 * 184.99738 * 10 8 7 12 12 H 1.07998 * 119.99951 * 0.02562 * 11 10 8 13 13 C 1.37874 * 120.00412 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99958 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47107 * 60.00003 * 15 13 11 17 17 H 1.48502 * 109.47296 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47259 * 299.99833 * 15 13 11 19 19 C 1.53135 * 109.58035 * 309.68971 * 8 7 6 20 20 C 1.50802 * 128.52262 * 179.87553 * 5 4 3 21 21 H 1.08995 * 109.47026 * 270.02949 * 1 2 3 22 22 H 1.09000 * 109.46763 * 30.02791 * 1 2 3 23 23 H 1.09000 * 109.46672 * 150.02915 * 1 2 3 24 24 H 1.08998 * 109.59185 * 316.89322 * 7 6 2 25 25 H 1.08997 * 109.59882 * 77.35292 * 7 6 2 26 26 H 1.09004 * 109.47258 * 305.00363 * 10 8 7 27 27 H 1.09009 * 109.47207 * 65.00228 * 10 8 7 28 28 H 0.96995 * 120.00101 * 179.97438 * 14 13 11 29 29 H 1.09003 * 109.50369 * 189.38731 * 19 8 7 30 30 H 1.09002 * 109.49987 * 309.48347 * 19 8 7 31 31 H 1.08996 * 109.73139 * 315.58354 * 20 5 4 32 32 H 1.09002 * 109.72701 * 76.26722 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4980 0.0030 8 6 3.1548 -3.3253 0.4301 9 1 3.3611 -3.1493 1.4858 10 6 2.8645 -4.8112 0.2091 11 6 4.0108 -5.6317 0.7416 12 1 4.8612 -5.1424 1.1930 13 6 3.9740 -7.0071 0.6527 14 7 2.9386 -7.6030 0.1026 15 14 5.3947 -8.0242 1.3134 16 1 5.5569 -7.7629 2.7663 17 1 5.1130 -9.4663 1.0988 18 1 6.6434 -7.6520 0.6011 19 6 4.3721 -2.9141 -0.4029 20 6 4.8052 -1.4971 -0.0049 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8903 -0.5134 24 1 1.1197 -2.6604 0.7061 25 1 1.6251 -2.7961 -0.9980 26 1 1.9482 -5.0842 0.7327 27 1 2.7447 -5.0034 -0.8572 28 1 2.9129 -8.5706 0.0396 29 1 5.1907 -3.6101 -0.2193 30 1 4.1111 -2.9300 -1.4611 31 1 5.5304 -1.1172 -0.7245 32 1 5.2485 -1.5151 0.9907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = 50.806544 kcal Electronic energy + Delta-G solvation = -14975.403372 eV Core-core repulsion = 12550.264489 eV Total energy + Delta-G solvation = -2425.138883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.00217 -37.38310 -33.92952 -33.24399 -31.46648 -30.48965 -27.37595 -27.01726 -23.92385 -23.05200 -21.37487 -20.50846 -18.93427 -16.85594 -16.22966 -16.04404 -14.65677 -14.62783 -14.12078 -13.81224 -13.70215 -13.01800 -12.91336 -12.56319 -12.31852 -12.18245 -11.48250 -11.24948 -10.98246 -10.92458 -10.62562 -10.53078 -10.14560 -10.01141 -9.74615 -9.54645 -9.26229 -8.69663 -8.51295 -6.16328 -4.19608 2.08743 2.80688 3.09709 3.24025 3.29620 3.31393 4.31999 4.42113 4.67062 4.91002 4.96752 5.05984 5.21113 5.26596 5.40286 5.53131 5.56628 5.70650 5.72660 5.95592 6.06887 6.10897 6.35231 6.41685 6.55437 6.66217 6.74652 7.18668 7.39814 7.50085 7.79972 8.19825 8.85120 9.00260 9.45605 10.94834 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050684 B = 0.006717 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.314115 B = 4167.250787 C = 4601.104916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.164 3.836 3 N -0.309 5.309 4 N -0.305 5.305 5 C 0.185 3.815 6 N -0.462 5.462 7 C 0.103 3.897 8 C -0.094 4.094 9 H 0.071 0.929 10 C 0.032 3.968 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.114 4.114 20 C -0.037 4.037 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 8.332 -0.696 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.151 5.151 4 N -0.145 5.145 5 C -0.083 4.083 6 N -0.152 5.152 7 C -0.019 4.019 8 C -0.113 4.113 9 H 0.089 0.911 10 C -0.005 4.005 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.152 4.152 20 C -0.077 4.077 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.382 9.584 -0.745 9.904 hybrid contribution 0.218 -2.030 0.358 2.072 sum -2.164 7.554 -0.387 7.868 Atomic orbital electron populations 1.20143 0.84134 1.04196 1.03744 1.24578 0.96988 0.83338 1.05457 1.74364 0.96333 1.24102 1.20261 1.73980 1.12203 1.08469 1.19890 1.24833 0.87595 0.92199 1.03684 1.46181 1.06791 1.09111 1.53155 1.22408 1.00913 0.75103 1.03449 1.21657 0.91393 0.98519 0.99688 0.91071 1.19076 0.97600 0.86155 0.97679 1.21084 1.04289 0.91151 1.39534 0.92318 1.25001 0.95970 0.98080 0.95171 1.69935 1.29443 1.09792 1.44064 0.86641 0.82620 0.79151 0.79538 1.20189 1.21258 1.20098 1.21743 0.99993 0.93810 0.99610 1.20360 0.90630 0.92936 1.03753 0.89905 0.89077 0.90475 0.89166 0.89445 0.96121 0.95991 0.92750 0.88333 0.92067 0.88944 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.29 36.01 0.37 -0.30 16 2 C 0.16 2.59 8.07 -155.45 -1.25 1.34 16 3 N -0.31 -5.78 12.23 32.70 0.40 -5.38 16 4 N -0.31 -5.90 12.21 32.76 0.40 -5.50 16 5 C 0.18 3.21 7.75 -155.30 -1.20 2.01 16 6 N -0.46 -7.52 3.11 -110.86 -0.35 -7.87 16 7 C 0.10 1.57 6.03 -4.01 -0.02 1.55 16 8 C -0.09 -1.66 2.15 -90.39 -0.19 -1.85 16 9 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 10 C 0.03 0.73 4.44 -27.88 -0.12 0.60 16 11 C -0.52 -13.20 8.27 -34.44 -0.28 -13.48 16 12 H 0.06 1.43 7.11 -52.49 -0.37 1.06 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 15 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.11 -1.85 5.17 -26.44 -0.14 -1.99 16 20 C -0.04 -0.55 6.34 -27.62 -0.17 -0.73 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.10 1.71 6.73 -51.93 -0.35 1.36 16 30 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 267.20 15.07 4.03 4.03 Total: -1.00 -30.29 267.20 -7.43 -37.72 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.50 Total: -2.64 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.12 Total: -11.38 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 1.19 Total: -43.01 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.29 -7.43 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.523 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds