Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 126.46689 * 2 1 4 4 N 1.28906 * 109.74447 * 180.02562 * 3 2 1 5 5 C 1.29844 * 109.47701 * 0.02562 * 4 3 2 6 6 N 1.34696 * 126.46632 * 179.97438 * 2 1 3 7 7 C 1.46261 * 128.84316 * 359.90422 * 6 2 1 8 8 C 1.53319 * 108.72098 * 197.12446 * 7 6 2 9 9 H 1.08999 * 109.45417 * 69.72526 * 8 7 6 10 10 C 1.52999 * 109.45261 * 189.65407 * 8 7 6 11 11 C 1.50697 * 109.47499 * 184.99738 * 10 8 7 12 12 H 1.07998 * 119.99951 * 0.02562 * 11 10 8 13 13 C 1.37874 * 120.00412 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99958 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47107 * 60.00003 * 15 13 11 17 17 H 1.48502 * 109.47296 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47259 * 299.99833 * 15 13 11 19 19 C 1.53135 * 109.58035 * 309.68971 * 8 7 6 20 20 C 1.50802 * 128.52262 * 179.87553 * 5 4 3 21 21 H 1.08995 * 109.47026 * 270.02949 * 1 2 3 22 22 H 1.09000 * 109.46763 * 30.02791 * 1 2 3 23 23 H 1.09000 * 109.46672 * 150.02915 * 1 2 3 24 24 H 1.08998 * 109.59185 * 316.89322 * 7 6 2 25 25 H 1.08997 * 109.59882 * 77.35292 * 7 6 2 26 26 H 1.09004 * 109.47258 * 305.00363 * 10 8 7 27 27 H 1.09009 * 109.47207 * 65.00228 * 10 8 7 28 28 H 0.96995 * 120.00101 * 179.97438 * 14 13 11 29 29 H 1.09003 * 109.50369 * 189.38731 * 19 8 7 30 30 H 1.09002 * 109.49987 * 309.48347 * 19 8 7 31 31 H 1.08996 * 109.73139 * 315.58354 * 20 5 4 32 32 H 1.09002 * 109.72701 * 76.26722 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4980 0.0030 8 6 3.1548 -3.3253 0.4301 9 1 3.3611 -3.1493 1.4858 10 6 2.8645 -4.8112 0.2091 11 6 4.0108 -5.6317 0.7416 12 1 4.8612 -5.1424 1.1930 13 6 3.9740 -7.0071 0.6527 14 7 2.9386 -7.6030 0.1026 15 14 5.3947 -8.0242 1.3134 16 1 5.5569 -7.7629 2.7663 17 1 5.1130 -9.4663 1.0988 18 1 6.6434 -7.6520 0.6011 19 6 4.3721 -2.9141 -0.4029 20 6 4.8052 -1.4971 -0.0049 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8903 -0.5134 24 1 1.1197 -2.6604 0.7061 25 1 1.6251 -2.7961 -0.9980 26 1 1.9482 -5.0842 0.7327 27 1 2.7447 -5.0034 -0.8572 28 1 2.9129 -8.5706 0.0396 29 1 5.1907 -3.6101 -0.2193 30 1 4.1111 -2.9300 -1.4611 31 1 5.5304 -1.1172 -0.7245 32 1 5.2485 -1.5151 0.9907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = 34.192066 kcal Electronic energy + Delta-G solvation = -14976.123830 eV Core-core repulsion = 12550.264489 eV Total energy + Delta-G solvation = -2425.859341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.28556 -38.78654 -35.35848 -34.86015 -33.00550 -31.67443 -28.97480 -28.25065 -25.53309 -24.47771 -22.76334 -21.85773 -20.30264 -18.61835 -17.50449 -17.48975 -16.49301 -15.97659 -15.42893 -15.01689 -14.90948 -14.40137 -14.19008 -13.87236 -13.65244 -13.41151 -13.01079 -12.82155 -12.57208 -12.48400 -12.32906 -11.96491 -11.66435 -11.37157 -11.27679 -11.09302 -10.98225 -10.51450 -9.97009 -8.17501 -6.25526 0.85455 1.45211 1.45383 1.52577 1.57921 1.78685 2.43638 3.17820 3.24540 3.50950 3.60991 3.79448 3.82496 4.13203 4.27486 4.39207 4.50691 4.65810 4.71632 4.76759 4.86202 4.95100 4.98118 5.11666 5.18647 5.26523 5.36552 5.51160 5.69022 5.84026 5.96078 6.26033 6.89150 7.43286 7.70009 8.93869 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050684 B = 0.006717 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.314115 B = 4167.250787 C = 4601.104916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.173 3.827 3 N -0.346 5.346 4 N -0.336 5.336 5 C 0.176 3.824 6 N -0.467 5.467 7 C 0.111 3.889 8 C -0.084 4.084 9 H 0.066 0.934 10 C 0.039 3.961 11 C -0.530 4.530 12 H 0.066 0.934 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.954 3.046 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.267 1.267 19 C -0.107 4.107 20 C -0.029 4.029 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.262 0.738 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 8.665 -0.392 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.093 4.093 6 N -0.157 5.157 7 C -0.011 4.011 8 C -0.103 4.103 9 H 0.084 0.916 10 C 0.002 3.998 11 C -0.568 4.568 12 H 0.084 0.916 13 C -0.193 4.193 14 N -0.572 5.572 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.192 1.192 19 C -0.145 4.145 20 C -0.068 4.068 21 H 0.119 0.881 22 H 0.122 0.878 23 H 0.115 0.885 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.345 9.944 -0.436 10.226 hybrid contribution 0.164 -2.113 0.261 2.135 sum -2.182 7.831 -0.175 8.131 Atomic orbital electron populations 1.20420 0.80608 1.05819 1.05397 1.25478 0.98783 0.82360 1.02861 1.74300 0.96568 1.25527 1.22304 1.73898 1.12971 1.09513 1.21133 1.25203 0.88629 0.92084 1.03395 1.46269 1.06665 1.09410 1.53344 1.22315 1.00012 0.74301 1.04470 1.21407 0.93277 0.95901 0.99754 0.91596 1.18902 0.95955 0.89084 0.95890 1.21551 1.05083 0.91614 1.38568 0.91632 1.25810 0.98257 0.99536 0.95694 1.70055 1.31397 1.09902 1.45828 0.85667 0.79934 0.77346 0.79119 1.19574 1.21520 1.19176 1.21627 0.98970 0.94553 0.99332 1.20373 0.90219 0.91333 1.04879 0.88083 0.87765 0.88549 0.87310 0.88539 0.98002 0.97829 0.92934 0.89331 0.92060 0.87137 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.29 71.24 0.73 -0.42 16 2 C 0.17 5.13 8.07 138.14 1.11 6.24 16 3 N -0.35 -12.58 12.23 -50.46 -0.62 -13.20 16 4 N -0.34 -12.69 12.21 -50.28 -0.61 -13.31 16 5 C 0.18 5.85 7.75 138.14 1.07 6.93 16 6 N -0.47 -14.29 3.11 -504.65 -1.57 -15.86 16 7 C 0.11 3.14 6.03 86.53 0.52 3.67 16 8 C -0.08 -2.89 2.15 -10.64 -0.02 -2.91 16 9 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 10 C 0.04 1.75 4.44 29.85 0.13 1.89 16 11 C -0.53 -26.55 8.27 25.60 0.21 -26.34 16 12 H 0.07 3.12 7.11 -2.91 -0.02 3.10 16 13 C 0.01 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -52.53 13.29 21.45 0.28 -52.24 16 15 Si 0.95 41.28 29.54 68.60 2.03 43.30 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.11 -3.35 5.17 30.78 0.16 -3.19 16 20 C -0.03 -0.81 6.34 30.02 0.19 -0.62 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.10 1.40 8.04 -2.39 -0.02 1.38 16 24 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.10 2.60 8.12 -2.39 -0.02 2.58 16 26 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 27 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.09 2.96 6.73 -2.39 -0.02 2.95 16 30 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 31 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -64.52 267.20 5.18 -59.34 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.10 Total: 5.99 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.57 Total: -14.02 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -2.52 Total: -94.61 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -64.52 5.18 -59.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds