Wall clock time and date at job start Mon Mar 30 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33474 * 125.49393 * 2 1 4 4 C 1.30326 * 109.72246 * 180.02562 * 3 2 1 5 5 N 1.34676 * 108.04796 * 359.93019 * 4 3 2 6 6 N 1.30971 * 125.50051 * 180.02562 * 2 1 3 7 7 C 1.46300 * 125.04589 * 180.12061 * 5 4 3 8 8 C 1.53306 * 108.89259 * 16.92944 * 7 5 4 9 9 C 1.53199 * 109.46413 * 310.09314 * 8 7 5 10 10 H 1.09000 * 109.43514 * 308.98955 * 9 8 7 11 11 C 1.53004 * 109.48102 * 188.96800 * 9 8 7 12 12 C 1.50693 * 109.47266 * 175.07134 * 11 9 8 13 13 H 1.08006 * 119.99727 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00049 * 179.97438 * 12 11 9 15 15 N 1.31506 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99957 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47162 * 89.99809 * 16 14 12 18 18 H 1.48503 * 109.46952 * 210.00049 * 16 14 12 19 19 H 1.48504 * 109.46831 * 329.99706 * 16 14 12 20 20 C 1.50931 * 127.90059 * 179.88993 * 4 3 2 21 21 H 1.08997 * 109.47559 * 270.00403 * 1 2 3 22 22 H 1.08995 * 109.47171 * 30.00723 * 1 2 3 23 23 H 1.09003 * 109.46815 * 150.00399 * 1 2 3 24 24 H 1.09002 * 109.58605 * 136.78999 * 7 5 4 25 25 H 1.08996 * 109.58881 * 257.07174 * 7 5 4 26 26 H 1.09001 * 109.46509 * 69.94773 * 8 7 5 27 27 H 1.08996 * 109.46672 * 189.93249 * 8 7 5 28 28 H 1.09004 * 109.46683 * 295.07166 * 11 9 8 29 29 H 1.08997 * 109.47038 * 55.06885 * 11 9 8 30 30 H 0.97010 * 120.00053 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.72088 * 315.64627 * 20 4 3 32 32 H 1.09000 * 109.71449 * 76.28718 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 -0.0005 5 7 3.5897 -0.6132 0.0006 6 7 2.2676 -1.0663 -0.0005 7 6 4.8198 -1.4051 0.0030 8 6 5.9877 -0.5066 0.4263 9 6 5.9680 0.7810 -0.4036 10 1 5.9035 0.5293 -1.4621 11 6 7.2501 1.5747 -0.1445 12 6 7.2870 2.7790 -1.0495 13 1 6.4771 2.9600 -1.7408 14 6 8.3546 3.6498 -0.9952 15 7 9.3404 3.4297 -0.1531 16 14 8.3999 5.1431 -2.1167 17 1 7.7480 6.2918 -1.4380 18 1 9.8110 5.4869 -2.4263 19 1 7.6769 4.8375 -3.3772 20 6 4.7521 1.6266 -0.0030 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8901 -0.5138 24 1 4.7210 -2.2316 0.7067 25 1 5.0042 -1.7969 -0.9972 26 1 5.8896 -0.2571 1.4828 27 1 6.9283 -1.0326 0.2631 28 1 7.2716 1.9009 0.8954 29 1 8.1154 0.9429 -0.3450 30 1 10.0914 4.0426 -0.1146 31 1 4.6132 2.4344 -0.7215 32 1 4.9051 2.0420 0.9930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:15 Heat of formation + Delta-G solvation = 60.885354 kcal Electronic energy + Delta-G solvation = -14821.752427 eV Core-core repulsion = 12397.050594 eV Total energy + Delta-G solvation = -2424.701833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.98795 -37.19497 -33.76691 -32.41157 -31.74723 -29.77664 -28.16849 -26.85549 -24.12916 -22.70339 -20.90288 -20.07027 -18.84063 -16.64816 -16.08795 -15.83054 -14.68905 -14.50519 -13.95531 -13.81870 -13.52676 -13.00664 -12.71682 -12.41383 -12.06130 -11.90644 -11.63195 -11.33914 -11.09750 -10.83713 -10.61465 -10.46454 -10.05113 -9.69901 -9.42270 -9.35904 -9.10863 -8.93912 -8.43151 -6.07647 -4.10483 1.92257 2.60117 3.17224 3.29443 3.36363 3.39409 4.30711 4.40543 4.59789 4.95964 5.05936 5.14806 5.27320 5.30713 5.50223 5.58008 5.67968 5.79629 5.83357 6.03942 6.10731 6.20713 6.57504 6.62219 6.67750 6.73431 6.83064 7.15751 7.52726 7.62886 7.89763 8.30152 8.46129 8.95246 9.54841 11.03335 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042271 B = 0.006734 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.237621 B = 4157.224855 C = 4670.103047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.208 3.792 3 N -0.549 5.549 4 C 0.294 3.706 5 N -0.377 5.377 6 N -0.333 5.333 7 C 0.129 3.871 8 C -0.134 4.134 9 C -0.087 4.087 10 H 0.067 0.933 11 C 0.031 3.969 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.029 4.029 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.021 0.979 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.106 0.894 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 -7.586 1.032 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 N -0.278 5.278 4 C 0.018 3.982 5 N -0.167 5.167 6 N -0.162 5.162 7 C 0.007 3.993 8 C -0.172 4.172 9 C -0.106 4.106 10 H 0.086 0.914 11 C -0.006 4.006 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.068 4.068 21 H 0.097 0.903 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.156 -8.005 1.088 12.977 hybrid contribution 0.404 0.778 -0.578 1.050 sum -9.752 -7.227 0.510 12.148 Atomic orbital electron populations 1.20001 0.84405 1.03569 1.03245 1.24339 0.98043 0.85991 0.98997 1.70216 1.00218 1.30631 1.26728 1.24900 0.95224 0.84053 0.94010 1.50226 1.05379 1.06257 1.54887 1.77772 0.87174 1.22865 1.28423 1.21941 0.79849 0.94367 1.03109 1.22167 0.96481 0.97159 1.01416 1.21447 0.97235 0.93214 0.98692 0.91442 1.19131 0.89702 0.94293 0.97511 1.21207 1.05531 1.08340 1.21023 0.92434 1.24989 0.95599 0.98023 0.95559 1.69948 1.09388 1.37443 1.36526 0.86623 0.77200 0.83231 0.81172 1.20551 1.21271 1.19847 1.20553 0.85616 0.95855 1.04783 0.90287 0.89830 0.90463 0.89466 0.89830 0.90998 0.88762 0.96034 0.95907 0.92916 0.87538 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.61 10.51 36.01 0.38 -0.24 16 2 C 0.21 3.53 8.15 -156.43 -1.27 2.25 16 3 N -0.55 -10.40 11.18 -8.03 -0.09 -10.49 16 4 C 0.29 5.42 7.72 -155.78 -1.20 4.22 16 5 N -0.38 -6.52 4.04 -58.29 -0.24 -6.76 16 6 N -0.33 -5.91 12.74 32.50 0.41 -5.49 16 7 C 0.13 1.79 7.29 -3.99 -0.03 1.76 16 8 C -0.13 -1.96 5.26 -26.47 -0.14 -2.10 16 9 C -0.09 -1.58 2.16 -90.30 -0.19 -1.78 16 10 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 11 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 12 C -0.52 -13.62 8.55 -34.44 -0.29 -13.92 16 13 H 0.06 1.46 7.12 -52.48 -0.37 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.03 -0.52 5.25 -27.55 -0.14 -0.66 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 28 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.02 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.11 2.03 7.37 -51.93 -0.38 1.65 16 32 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 LS Contribution 269.08 15.07 4.06 4.06 Total: -1.00 -30.74 269.08 -7.80 -38.54 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.53 Total: -2.56 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.12 Total: -8.35 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.83 Total: -47.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.74 -7.80 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.421 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds