Wall clock time and date at job start Mon Mar 30 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33474 * 125.49393 * 2 1 4 4 C 1.30326 * 109.72246 * 180.02562 * 3 2 1 5 5 N 1.34676 * 108.04796 * 359.93019 * 4 3 2 6 6 N 1.30971 * 125.50051 * 180.02562 * 2 1 3 7 7 C 1.46300 * 125.04589 * 180.12061 * 5 4 3 8 8 C 1.53306 * 108.89259 * 16.92944 * 7 5 4 9 9 C 1.53199 * 109.46413 * 310.09314 * 8 7 5 10 10 H 1.09000 * 109.43514 * 308.98955 * 9 8 7 11 11 C 1.53004 * 109.48102 * 188.96800 * 9 8 7 12 12 C 1.50693 * 109.47266 * 175.07134 * 11 9 8 13 13 H 1.08006 * 119.99727 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00049 * 179.97438 * 12 11 9 15 15 N 1.31506 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99957 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47162 * 89.99809 * 16 14 12 18 18 H 1.48503 * 109.46952 * 210.00049 * 16 14 12 19 19 H 1.48504 * 109.46831 * 329.99706 * 16 14 12 20 20 C 1.50931 * 127.90059 * 179.88993 * 4 3 2 21 21 H 1.08997 * 109.47559 * 270.00403 * 1 2 3 22 22 H 1.08995 * 109.47171 * 30.00723 * 1 2 3 23 23 H 1.09003 * 109.46815 * 150.00399 * 1 2 3 24 24 H 1.09002 * 109.58605 * 136.78999 * 7 5 4 25 25 H 1.08996 * 109.58881 * 257.07174 * 7 5 4 26 26 H 1.09001 * 109.46509 * 69.94773 * 8 7 5 27 27 H 1.08996 * 109.46672 * 189.93249 * 8 7 5 28 28 H 1.09004 * 109.46683 * 295.07166 * 11 9 8 29 29 H 1.08997 * 109.47038 * 55.06885 * 11 9 8 30 30 H 0.97010 * 120.00053 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.72088 * 315.64627 * 20 4 3 32 32 H 1.09000 * 109.71449 * 76.28718 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 -0.0005 5 7 3.5897 -0.6132 0.0006 6 7 2.2676 -1.0663 -0.0005 7 6 4.8198 -1.4051 0.0030 8 6 5.9877 -0.5066 0.4263 9 6 5.9680 0.7810 -0.4036 10 1 5.9035 0.5293 -1.4621 11 6 7.2501 1.5747 -0.1445 12 6 7.2870 2.7790 -1.0495 13 1 6.4771 2.9600 -1.7408 14 6 8.3546 3.6498 -0.9952 15 7 9.3404 3.4297 -0.1531 16 14 8.3999 5.1431 -2.1167 17 1 7.7480 6.2918 -1.4380 18 1 9.8110 5.4869 -2.4263 19 1 7.6769 4.8375 -3.3772 20 6 4.7521 1.6266 -0.0030 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3633 -0.8901 -0.5138 24 1 4.7210 -2.2316 0.7067 25 1 5.0042 -1.7969 -0.9972 26 1 5.8896 -0.2571 1.4828 27 1 6.9283 -1.0326 0.2631 28 1 7.2716 1.9009 0.8954 29 1 8.1154 0.9429 -0.3450 30 1 10.0914 4.0426 -0.1146 31 1 4.6132 2.4344 -0.7215 32 1 4.9051 2.0420 0.9930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:14 Heat of formation + Delta-G solvation = 43.159873 kcal Electronic energy + Delta-G solvation = -14822.521062 eV Core-core repulsion = 12397.050594 eV Total energy + Delta-G solvation = -2425.470467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.31216 -38.60732 -35.40505 -34.10076 -33.04319 -31.18253 -29.48148 -28.45107 -25.73725 -24.16883 -22.37634 -21.42940 -20.23184 -18.50059 -17.54280 -17.14152 -16.52792 -15.91933 -15.32745 -15.13829 -14.85685 -14.29699 -14.05617 -13.71374 -13.54191 -13.19821 -13.16649 -12.81958 -12.75049 -12.44538 -12.34905 -12.06496 -11.65642 -11.21788 -11.07893 -10.96151 -10.68205 -10.50915 -10.22422 -8.15561 -6.23621 0.58247 1.37281 1.43319 1.44816 1.54076 1.84727 2.44511 3.01926 3.20424 3.37513 3.74740 3.79919 3.91569 4.15745 4.32130 4.39917 4.54480 4.74480 4.80627 4.82747 4.90854 4.94791 5.10506 5.13350 5.21115 5.38626 5.53728 5.55445 5.71748 5.85786 5.88399 6.28899 6.91865 7.13151 7.45251 8.95645 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042271 B = 0.006734 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.237621 B = 4157.224855 C = 4670.103047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.201 3.799 3 N -0.574 5.574 4 C 0.281 3.719 5 N -0.379 5.379 6 N -0.346 5.346 7 C 0.128 3.872 8 C -0.124 4.124 9 C -0.076 4.076 10 H 0.064 0.936 11 C 0.037 3.963 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.021 4.021 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.002 0.998 29 H 0.006 0.994 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 -8.341 0.628 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.081 4.081 3 N -0.303 5.303 4 C 0.005 3.995 5 N -0.169 5.169 6 N -0.176 5.176 7 C 0.007 3.993 8 C -0.163 4.163 9 C -0.095 4.095 10 H 0.082 0.918 11 C 0.000 4.000 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.777 3.223 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.060 4.060 21 H 0.115 0.885 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.020 0.980 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.316 -8.776 0.678 14.336 hybrid contribution 0.740 0.990 -0.440 1.312 sum -10.575 -7.786 0.238 13.135 Atomic orbital electron populations 1.20225 0.81100 1.04919 1.04803 1.25263 0.99972 0.85083 0.97767 1.70205 1.00730 1.31962 1.27449 1.24742 0.95127 0.84699 0.94927 1.50466 1.06154 1.06063 1.54231 1.77741 0.87349 1.23397 1.29112 1.22160 0.78067 0.94265 1.04781 1.22063 0.97977 0.95576 1.00644 1.21217 0.94698 0.94339 0.99254 0.91757 1.18981 0.91557 0.93781 0.95689 1.21642 1.05222 1.09162 1.21050 0.92238 1.25780 0.95483 1.00885 0.96992 1.70058 1.10103 1.38665 1.38236 0.85656 0.77164 0.79951 0.79555 1.20131 1.21109 1.19110 1.20358 0.85945 0.95573 1.04155 0.88504 0.88908 0.88657 0.86886 0.88299 0.90908 0.87001 0.97974 0.97580 0.92936 0.88964 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.07 10.51 71.24 0.75 -0.32 16 2 C 0.20 6.45 8.15 138.48 1.13 7.58 16 3 N -0.57 -21.22 11.18 -179.31 -2.01 -23.22 16 4 C 0.28 10.15 7.72 138.37 1.07 11.22 16 5 N -0.38 -12.43 4.04 -338.34 -1.37 -13.80 16 6 N -0.35 -11.62 12.74 -51.08 -0.65 -12.27 16 7 C 0.13 3.21 7.29 86.52 0.63 3.84 16 8 C -0.12 -3.44 5.26 30.76 0.16 -3.28 16 9 C -0.08 -2.73 2.16 -10.58 -0.02 -2.76 16 10 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 11 C 0.04 1.72 4.43 29.85 0.13 1.86 16 12 C -0.53 -27.95 8.55 25.60 0.22 -27.73 16 13 H 0.06 3.03 7.12 -2.91 -0.02 3.01 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -53.82 13.29 21.45 0.28 -53.54 16 16 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 C -0.02 -0.75 5.25 30.06 0.16 -0.60 16 21 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 27 H 0.11 2.73 8.12 -2.39 -0.02 2.71 16 28 H 0.00 0.10 8.12 -2.38 -0.02 0.08 16 29 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 30 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 31 H 0.09 3.58 7.37 -2.39 -0.02 3.56 16 32 H 0.09 3.41 8.09 -2.39 -0.02 3.39 16 Total: -1.00 -65.23 269.08 4.07 -61.16 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.10 Total: 6.09 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.69 Total: -9.35 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.74 Total: -102.83 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -65.23 4.07 -61.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.320 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds