Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46928 * 2 1 4 4 N 1.46497 * 109.47304 * 119.99798 * 2 1 3 5 5 N 1.28735 * 125.90748 * 300.02684 * 4 2 1 6 6 N 1.28646 * 110.17047 * 180.02562 * 5 4 2 7 7 C 1.33846 * 108.83410 * 359.97204 * 6 5 4 8 8 C 1.35038 * 106.52091 * 359.97438 * 7 6 5 9 9 C 1.51066 * 110.37426 * 180.02562 * 8 7 6 10 10 C 1.54502 * 104.99668 * 343.20376 * 9 8 7 11 11 C 1.51114 * 143.16492 * 180.02562 * 7 6 5 12 12 H 1.09000 * 110.41927 * 77.84331 * 11 7 6 13 13 C 1.50694 * 110.33402 * 315.65500 * 11 7 6 14 14 H 1.08000 * 120.00563 * 244.41372 * 13 11 7 15 15 C 1.37885 * 119.99902 * 64.41208 * 13 11 7 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48498 * 109.47200 * 59.99994 * 17 15 13 19 19 H 1.48498 * 109.46671 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47156 * 300.00008 * 17 15 13 21 21 H 1.08994 * 109.47657 * 299.99666 * 1 2 3 22 22 H 1.09001 * 109.47440 * 60.00486 * 1 2 3 23 23 H 1.09004 * 109.46669 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47594 * 240.00025 * 2 1 3 25 25 H 1.08993 * 109.46912 * 60.00234 * 3 2 1 26 26 H 1.09001 * 109.47068 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46977 * 299.99640 * 3 2 1 28 28 H 1.09008 * 110.33362 * 224.32488 * 9 8 7 29 29 H 1.08996 * 110.42842 * 102.12827 * 9 8 7 30 30 H 1.08998 * 110.93227 * 267.32892 * 10 9 8 31 31 H 1.09003 * 110.92850 * 143.66860 * 10 9 8 32 32 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7781 -0.3516 2.4146 6 7 2.3559 -1.1674 3.2242 7 6 3.0103 -2.0923 2.5116 8 6 2.7991 -1.7956 1.2113 9 6 3.5043 -2.7934 0.3229 10 6 4.5290 -3.4937 1.2430 11 6 3.8802 -3.3218 2.6346 12 1 3.2738 -4.1937 2.8799 13 6 4.9404 -3.1103 3.6845 14 1 5.9832 -3.0967 3.4039 15 6 4.5790 -2.9341 5.0034 16 7 3.3092 -2.9511 5.3452 17 14 5.8936 -2.6796 6.3060 18 1 6.6805 -1.4622 5.9839 19 1 5.2493 -2.5151 7.6338 20 1 6.7959 -3.8587 6.3357 21 1 -0.3634 0.5137 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 4.0154 -2.2804 -0.4918 29 1 2.7937 -3.5186 -0.0736 30 1 5.4966 -2.9936 1.2000 31 1 4.6258 -4.5486 0.9862 32 1 3.0550 -2.8268 6.2730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261238823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = 100.640733 kcal Electronic energy + Delta-G solvation = -15310.231652 eV Core-core repulsion = 12887.253741 eV Total energy + Delta-G solvation = -2422.977910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.25106 -36.52673 -35.43695 -32.36961 -30.61499 -28.10615 -27.42425 -27.32391 -23.64537 -23.14790 -20.97128 -19.87778 -18.58381 -16.58990 -16.20071 -15.38847 -14.45814 -14.33028 -13.84713 -12.99372 -12.91172 -12.82217 -12.27947 -12.22087 -12.03648 -11.65733 -11.47794 -11.39687 -11.19596 -10.75781 -10.50654 -10.38514 -10.05428 -9.63015 -9.24342 -9.06782 -8.79322 -8.26863 -7.55146 -5.83045 -3.91603 2.59698 3.03590 3.42563 3.47977 3.48934 4.01047 4.57241 4.59023 4.87418 4.90811 5.01290 5.41697 5.47147 5.54723 5.64261 5.69737 5.70648 5.79691 5.95130 6.10279 6.12910 6.17137 6.51369 6.66275 6.80065 6.86867 7.17069 7.60756 7.65268 7.76326 8.05248 8.41644 9.07060 9.73077 9.83858 11.23798 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038976 B = 0.008966 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.222396 B = 3122.243028 C = 3459.235081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 C -0.160 4.160 4 N -0.286 5.286 5 N -0.122 5.122 6 N -0.220 5.220 7 C 0.058 3.942 8 C -0.117 4.117 9 C -0.021 4.021 10 C -0.107 4.107 11 C 0.116 3.884 12 H 0.048 0.952 13 C -0.532 4.532 14 H 0.057 0.943 15 C 0.073 3.927 16 N -0.851 5.851 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 3.553 -13.106 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 C -0.218 4.218 4 N -0.081 5.081 5 N -0.099 5.099 6 N -0.084 5.084 7 C -0.081 4.081 8 C -0.248 4.248 9 C -0.061 4.061 10 C -0.146 4.146 11 C 0.096 3.904 12 H 0.066 0.934 13 C -0.570 4.570 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.485 5.485 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.751 4.618 -11.997 13.391 hybrid contribution 1.021 -0.251 -0.025 1.052 sum -2.730 4.366 -12.022 13.079 Atomic orbital electron populations 1.22111 0.93170 1.03078 1.03360 1.21399 0.95693 0.94038 0.84759 1.22115 1.01980 0.94333 1.03338 1.46641 1.34881 1.19434 1.07145 1.78395 1.22809 1.23229 0.85479 1.74811 1.08275 1.01858 1.23470 1.23491 0.98034 0.99182 0.87384 1.22803 1.05239 0.95067 1.01702 1.20414 0.96524 0.93319 0.95832 1.22517 0.97516 0.99026 0.95543 1.17802 0.92315 0.88823 0.91464 0.93424 1.20873 0.92019 1.52596 0.91539 0.92446 1.24970 0.95022 0.94794 0.98517 1.69967 1.14907 1.46012 1.17639 0.86743 0.82033 0.78485 0.81157 1.20513 1.21335 1.20361 0.90876 0.90795 0.92017 0.88380 0.90891 0.91977 0.90794 0.92342 0.91213 0.91323 0.91341 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.39 37.15 0.35 -1.55 16 2 C 0.14 1.99 3.65 -67.93 -0.25 1.74 16 3 C -0.16 -1.94 9.39 37.16 0.35 -1.59 16 4 N -0.29 -5.70 3.07 -50.55 -0.16 -5.85 16 5 N -0.12 -2.92 12.89 60.35 0.78 -2.14 16 6 N -0.22 -6.11 11.80 33.35 0.39 -5.72 16 7 C 0.06 1.53 6.68 -82.65 -0.55 0.97 16 8 C -0.12 -2.50 7.62 -82.01 -0.62 -3.13 16 9 C -0.02 -0.36 6.78 -26.92 -0.18 -0.55 16 10 C -0.11 -2.08 6.63 -25.16 -0.17 -2.25 16 11 C 0.12 2.95 2.77 -91.94 -0.25 2.70 16 12 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.53 -14.93 8.51 -34.44 -0.29 -15.22 16 14 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 15 C 0.07 2.11 5.34 -17.82 -0.10 2.02 16 16 N -0.85 -25.75 12.13 55.43 0.67 -25.08 16 17 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.33 7.77 -51.93 -0.40 0.92 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 270.68 15.07 4.08 4.08 Total: -1.00 -33.51 270.68 -5.56 -39.06 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -4.58 Total: -4.66 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.72 Total: -16.86 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 1.69 Total: -38.78 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.51 -5.56 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.704 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds