Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46928 * 2 1 4 4 N 1.46497 * 109.47304 * 119.99798 * 2 1 3 5 5 N 1.28735 * 125.90748 * 300.02684 * 4 2 1 6 6 N 1.28646 * 110.17047 * 180.02562 * 5 4 2 7 7 C 1.33846 * 108.83410 * 359.97204 * 6 5 4 8 8 C 1.35038 * 106.52091 * 359.97438 * 7 6 5 9 9 C 1.51066 * 110.37426 * 180.02562 * 8 7 6 10 10 C 1.54502 * 104.99668 * 343.20376 * 9 8 7 11 11 C 1.51114 * 143.16492 * 180.02562 * 7 6 5 12 12 H 1.09000 * 110.41927 * 77.84331 * 11 7 6 13 13 C 1.50694 * 110.33402 * 315.65500 * 11 7 6 14 14 H 1.08000 * 120.00563 * 244.41372 * 13 11 7 15 15 C 1.37885 * 119.99902 * 64.41208 * 13 11 7 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48498 * 109.47200 * 59.99994 * 17 15 13 19 19 H 1.48498 * 109.46671 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47156 * 300.00008 * 17 15 13 21 21 H 1.08994 * 109.47657 * 299.99666 * 1 2 3 22 22 H 1.09001 * 109.47440 * 60.00486 * 1 2 3 23 23 H 1.09004 * 109.46669 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47594 * 240.00025 * 2 1 3 25 25 H 1.08993 * 109.46912 * 60.00234 * 3 2 1 26 26 H 1.09001 * 109.47068 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46977 * 299.99640 * 3 2 1 28 28 H 1.09008 * 110.33362 * 224.32488 * 9 8 7 29 29 H 1.08996 * 110.42842 * 102.12827 * 9 8 7 30 30 H 1.08998 * 110.93227 * 267.32892 * 10 9 8 31 31 H 1.09003 * 110.92850 * 143.66860 * 10 9 8 32 32 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7781 -0.3516 2.4146 6 7 2.3559 -1.1674 3.2242 7 6 3.0103 -2.0923 2.5116 8 6 2.7991 -1.7956 1.2113 9 6 3.5043 -2.7934 0.3229 10 6 4.5290 -3.4937 1.2430 11 6 3.8802 -3.3218 2.6346 12 1 3.2738 -4.1937 2.8799 13 6 4.9404 -3.1103 3.6845 14 1 5.9832 -3.0967 3.4039 15 6 4.5790 -2.9341 5.0034 16 7 3.3092 -2.9511 5.3452 17 14 5.8936 -2.6796 6.3060 18 1 6.6805 -1.4622 5.9839 19 1 5.2493 -2.5151 7.6338 20 1 6.7959 -3.8587 6.3357 21 1 -0.3634 0.5137 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 4.0154 -2.2804 -0.4918 29 1 2.7937 -3.5186 -0.0736 30 1 5.4966 -2.9936 1.2000 31 1 4.6258 -4.5486 0.9862 32 1 3.0550 -2.8268 6.2730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261238823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = 77.913853 kcal Electronic energy + Delta-G solvation = -15311.217163 eV Core-core repulsion = 12887.253741 eV Total energy + Delta-G solvation = -2423.963422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.95291 -38.08362 -36.82415 -34.42650 -32.16597 -29.89947 -29.16431 -28.26919 -25.61339 -24.61114 -22.48170 -21.60356 -20.13454 -18.45569 -17.77033 -17.05858 -16.35229 -15.59726 -15.29141 -14.59433 -14.29134 -14.12903 -13.87333 -13.78088 -13.40520 -13.16282 -12.97550 -12.67330 -12.45275 -12.42613 -12.36568 -12.06441 -11.65629 -11.56778 -11.05179 -10.91967 -10.50398 -10.42711 -9.31994 -7.99968 -6.13694 0.94824 1.40610 1.43631 1.50194 1.64017 2.11622 2.49106 3.26147 3.33814 3.63303 3.88010 4.00838 4.05210 4.41910 4.45446 4.56688 4.62845 4.62952 4.75520 4.87611 4.90712 5.03503 5.17266 5.17955 5.19444 5.36023 5.54196 5.65851 5.81660 5.93667 6.15748 6.33135 6.94334 7.54024 8.05674 9.05732 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038976 B = 0.008966 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.222396 B = 3122.243028 C = 3459.235081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 C -0.154 4.154 4 N -0.270 5.270 5 N -0.142 5.142 6 N -0.283 5.283 7 C 0.002 3.998 8 C -0.094 4.094 9 C -0.011 4.011 10 C -0.098 4.098 11 C 0.102 3.898 12 H 0.014 0.986 13 C -0.544 4.544 14 H 0.061 0.939 15 C 0.018 3.982 16 N -0.886 5.886 17 Si 0.947 3.053 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.261 1.261 21 H 0.049 0.951 22 H 0.119 0.881 23 H 0.052 0.948 24 H 0.135 0.865 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 3.870 -16.455 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 C -0.212 4.212 4 N -0.065 5.065 5 N -0.119 5.119 6 N -0.146 5.146 7 C -0.138 4.138 8 C -0.228 4.228 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.082 3.918 12 H 0.032 0.968 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.184 4.184 16 N -0.522 5.522 17 Si 0.774 3.226 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.185 1.185 21 H 0.069 0.931 22 H 0.137 0.863 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.138 4.954 -15.367 16.448 hybrid contribution 0.782 -0.322 0.905 1.239 sum -2.356 4.633 -14.462 15.368 Atomic orbital electron populations 1.22114 0.91689 1.02890 1.04465 1.22139 0.97011 0.94900 0.83292 1.22121 1.01300 0.93337 1.04463 1.47175 1.33038 1.18654 1.07672 1.78235 1.23390 1.23263 0.86985 1.74697 1.10292 1.03650 1.26012 1.23611 1.00303 1.00171 0.89750 1.23435 1.03488 0.94800 1.01048 1.20577 0.96297 0.92733 0.95423 1.22448 0.97620 1.01288 0.92255 1.17891 0.91667 0.87760 0.94478 0.96813 1.21355 0.92944 1.51329 0.92555 0.92122 1.25775 0.96788 0.94973 1.00880 1.70146 1.16848 1.47902 1.17302 0.85793 0.79705 0.78733 0.78414 1.20608 1.21652 1.18521 0.93132 0.86299 0.92848 0.84686 0.93152 0.92973 0.86265 0.87984 0.88113 0.91316 0.88526 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.39 71.98 0.68 -2.54 16 2 C 0.13 3.06 3.65 44.99 0.16 3.22 16 3 C -0.15 -3.28 9.39 71.98 0.68 -2.60 16 4 N -0.27 -10.41 3.07 -313.84 -0.96 -11.37 16 5 N -0.14 -6.93 12.89 37.02 0.48 -6.45 16 6 N -0.28 -16.40 11.80 -48.41 -0.57 -16.97 16 7 C 0.00 0.12 6.68 41.65 0.28 0.40 16 8 C -0.09 -3.87 7.62 41.40 0.32 -3.56 16 9 C -0.01 -0.33 6.78 30.47 0.21 -0.12 16 10 C -0.10 -3.56 6.63 31.61 0.21 -3.35 16 11 C 0.10 5.28 2.77 -11.65 -0.03 5.25 16 12 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 13 C -0.54 -31.12 8.51 25.60 0.22 -30.90 16 14 H 0.06 3.31 7.60 -2.91 -0.02 3.29 16 15 C 0.02 1.08 5.34 84.66 0.45 1.53 16 16 N -0.89 -56.23 12.13 21.45 0.26 -55.97 16 17 Si 0.95 46.72 29.54 68.60 2.03 48.75 16 18 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.14 2.34 8.07 -2.38 -0.02 2.33 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.48 7.77 -2.39 -0.02 2.46 16 31 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -78.88 270.68 5.49 -73.39 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.10 Total: 1.28 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.16 Total: -32.66 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -0.80 Total: -90.76 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.88 5.49 -73.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.302 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds