Wall clock time and date at job start Mon Mar 30 2020 03:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46577 * 2 1 4 4 C 1.50703 * 109.47034 * 119.99566 * 2 1 3 5 5 H 1.07997 * 119.99787 * 120.00119 * 4 2 1 6 6 C 1.37879 * 120.00018 * 300.00316 * 4 2 1 7 7 N 1.31508 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99698 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47359 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46778 * 119.99938 * 8 6 4 11 11 H 1.48498 * 109.47394 * 240.00052 * 8 6 4 12 12 C 1.50695 * 109.47402 * 240.00038 * 2 1 3 13 13 C 1.38116 * 120.83171 * 299.43605 * 12 2 1 14 14 N 1.32548 * 119.20188 * 180.02562 * 13 12 2 15 15 C 1.31789 * 121.00898 * 359.97438 * 14 13 12 16 16 N 1.31750 * 121.83131 * 359.73962 * 15 14 13 17 17 C 1.32996 * 120.68568 * 0.52418 * 16 15 14 18 18 N 1.38539 * 120.52999 * 179.76691 * 17 16 15 19 19 C 1.46902 * 110.99847 * 297.17444 * 18 17 16 20 20 C 1.46896 * 111.00203 * 61.12531 * 18 17 16 21 21 H 1.09004 * 109.47540 * 60.00280 * 1 2 3 22 22 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47550 * 300.00226 * 1 2 3 24 24 H 0.96999 * 120.00064 * 179.97438 * 7 6 4 25 25 H 1.08010 * 120.40216 * 0.04073 * 13 12 2 26 26 H 1.07999 * 119.08604 * 179.97438 * 15 14 13 27 27 H 1.09003 * 109.47061 * 180.02562 * 19 18 17 28 28 H 1.08990 * 109.47634 * 59.99867 * 19 18 17 29 29 H 1.08999 * 109.47052 * 299.99914 * 19 18 17 30 30 H 1.09004 * 109.47432 * 293.84548 * 20 18 17 31 31 H 1.09002 * 109.47339 * 53.84685 * 20 18 17 32 32 H 1.09007 * 109.47158 * 173.84279 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8165 11 1 1.1660 -1.5865 4.8162 12 6 2.0323 -0.7104 -1.2304 13 6 1.7188 -2.0357 -1.4602 14 7 2.1784 -2.6289 -2.5528 15 6 2.9261 -1.9734 -3.4178 16 7 3.2450 -0.7073 -3.2415 17 6 2.8260 -0.0452 -2.1669 18 7 3.1672 1.2848 -1.9823 19 6 4.6217 1.4414 -1.8485 20 6 2.6463 2.1183 -3.0740 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7088 1.1615 3.4843 25 1 1.1063 -2.5822 -0.7582 26 1 3.2843 -2.4874 -4.2976 27 1 4.8620 2.4948 -1.7042 28 1 5.1111 1.0771 -2.7517 29 1 4.9713 0.8684 -0.9897 30 1 3.1457 1.8511 -4.0053 31 1 1.5737 1.9539 -3.1767 32 1 2.8330 3.1687 -2.8500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:27 Heat of formation + Delta-G solvation = 39.180173 kcal Electronic energy + Delta-G solvation = -15295.121715 eV Core-core repulsion = 12869.478675 eV Total energy + Delta-G solvation = -2425.643040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09691 -38.34714 -36.70529 -33.95465 -33.32942 -30.37782 -28.57035 -27.18267 -26.53181 -25.40084 -22.97226 -21.88326 -18.91559 -18.44502 -17.93696 -16.75770 -16.41763 -15.78470 -15.26105 -15.20433 -14.99322 -14.47105 -14.27852 -13.56771 -13.22777 -13.06621 -12.98634 -12.82709 -12.76200 -12.71647 -12.19923 -12.12315 -11.41536 -11.26387 -11.12512 -10.51512 -10.13795 -9.91854 -9.57668 -8.06011 -6.18922 0.03256 0.18354 1.42136 1.45589 1.55140 2.45256 2.63719 2.87271 3.22663 3.37606 3.37965 4.02671 4.21942 4.30308 4.38391 4.58432 4.60752 4.64055 4.83697 4.89216 4.91285 4.97460 5.16408 5.26765 5.49479 5.63182 5.85231 5.98493 6.03293 6.10537 6.26791 6.35063 6.89042 7.16330 7.48044 8.98716 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.009981 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.165011 B = 2804.544260 C = 3134.963969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.089 3.911 3 H 0.037 0.963 4 C -0.521 4.521 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.948 3.052 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.279 1.279 12 C -0.126 4.126 13 C 0.142 3.858 14 N -0.533 5.533 15 C 0.272 3.728 16 N -0.555 5.555 17 C 0.317 3.683 18 N -0.504 5.504 19 C 0.038 3.962 20 C 0.037 3.963 21 H 0.019 0.981 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.262 0.738 25 H 0.168 0.832 26 H 0.225 0.775 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -0.063 -9.257 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 H 0.055 0.945 4 C -0.559 4.559 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.204 1.204 12 C -0.131 4.131 13 C -0.023 4.023 14 N -0.247 5.247 15 C -0.018 4.018 16 N -0.273 5.273 17 C 0.080 3.920 18 N -0.227 5.227 19 C -0.109 4.109 20 C -0.109 4.109 21 H 0.038 0.962 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.186 0.814 26 H 0.241 0.759 27 H 0.116 0.884 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.654 -0.237 -9.506 10.187 hybrid contribution 0.241 -0.173 1.074 1.114 sum 3.895 -0.410 -8.432 9.298 Atomic orbital electron populations 1.21649 0.97355 0.99201 0.99742 1.17534 0.92573 0.95700 0.87292 0.94510 1.21311 1.31288 1.12114 0.91182 0.93668 1.25560 0.95227 0.95577 1.01284 1.69998 1.37292 1.23712 1.23884 0.85660 0.78215 0.78656 0.80024 1.19703 1.20822 1.20434 1.22046 0.96879 0.96005 0.98168 1.23120 0.94627 0.91545 0.92995 1.68404 1.12189 1.40026 1.04094 1.25253 0.91445 0.86926 0.98137 1.68428 1.24519 1.11581 1.22740 1.20152 0.91883 0.91174 0.88813 1.59917 1.15514 1.02300 1.44983 1.22352 0.84168 1.03686 1.00659 1.22381 0.99691 0.97880 0.90985 0.96221 0.94894 0.91708 0.92903 0.81450 0.75891 0.88376 0.93834 0.93054 0.93732 0.92596 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.80 71.98 0.63 -5.11 16 2 C 0.09 4.35 2.46 -12.29 -0.03 4.32 16 3 H 0.04 1.99 7.03 -2.39 -0.02 1.97 16 4 C -0.52 -27.73 8.26 25.60 0.21 -27.52 16 5 H 0.05 2.43 7.60 -2.91 -0.02 2.40 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -50.65 11.32 21.45 0.24 -50.40 16 8 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 C -0.13 -5.40 4.77 -19.56 -0.09 -5.50 16 13 C 0.14 5.65 10.03 84.56 0.85 6.50 16 14 N -0.53 -19.22 10.43 -200.31 -2.09 -21.31 16 15 C 0.27 8.70 12.28 180.90 2.22 10.92 16 16 N -0.56 -19.49 9.82 -197.62 -1.94 -21.43 16 17 C 0.32 12.39 5.31 133.16 0.71 13.09 16 18 N -0.50 -18.11 3.80 -751.21 -2.86 -20.97 16 19 C 0.04 1.17 9.46 127.69 1.21 2.38 16 20 C 0.04 1.07 9.41 127.69 1.20 2.27 16 21 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 22 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 24 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 25 H 0.17 6.51 7.70 -2.91 -0.02 6.49 16 26 H 0.23 5.04 8.06 -2.91 -0.02 5.02 16 27 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.04 1.25 7.92 -2.39 -0.02 1.23 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.19 8.05 -2.38 -0.02 1.17 16 31 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -59.87 271.22 3.84 -56.03 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.10 Total: 10.31 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 7.36 Total: 3.03 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.64 Total: -114.11 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -59.87 3.84 -56.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.211 kcal (2) G-P(sol) polarization free energy of solvation -59.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds