Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46910 * 2 1 4 4 N 1.31802 * 119.12013 * 90.00209 * 3 2 1 5 5 C 1.32330 * 120.81769 * 180.02562 * 4 3 2 6 6 C 1.38594 * 119.10707 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.80279 * 180.02562 * 6 5 4 8 8 H 1.08991 * 109.47203 * 359.97438 * 7 6 5 9 9 C 1.50696 * 109.47390 * 119.99928 * 7 6 5 10 10 H 1.08007 * 119.99939 * 5.35940 * 9 7 6 11 11 C 1.37875 * 120.00345 * 185.08284 * 9 7 6 12 12 N 1.31515 * 119.99534 * 7.00703 * 11 9 7 13 13 Si 1.86795 * 120.00311 * 187.01098 * 11 9 7 14 14 H 1.48500 * 109.47698 * 94.26700 * 13 11 9 15 15 H 1.48502 * 109.47086 * 214.26662 * 13 11 9 16 16 H 1.48498 * 109.47228 * 334.26284 * 13 11 9 17 17 C 1.53005 * 109.46850 * 239.99789 * 7 6 5 18 18 N 1.46902 * 109.46721 * 64.83367 * 17 7 6 19 19 C 1.38604 * 118.39925 * 0.27546 * 6 5 4 20 20 N 1.31788 * 119.12607 * 270.02151 * 3 2 1 21 21 H 1.08999 * 109.47427 * 59.99344 * 1 2 3 22 22 H 1.09001 * 109.47346 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47320 * 299.99893 * 1 2 3 24 24 H 1.09002 * 109.46947 * 240.00478 * 2 1 3 25 25 H 1.08992 * 109.46688 * 120.00232 * 2 1 3 26 26 H 1.08005 * 120.44896 * 179.97438 * 5 4 3 27 27 H 0.97002 * 119.99824 * 180.02562 * 12 11 9 28 28 H 1.09004 * 109.46824 * 184.82914 * 17 7 6 29 29 H 1.09001 * 109.47309 * 304.83295 * 17 7 6 30 30 H 1.00896 * 111.00134 * 56.05006 * 18 17 7 31 31 H 1.00908 * 110.99409 * 179.97438 * 18 17 7 32 32 H 1.07997 * 120.44809 * 179.72983 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2461 2.0255 1.1514 5 6 2.6865 3.2728 1.1906 6 6 2.9230 3.9420 0.0002 7 6 3.4253 5.3628 0.0003 8 1 3.5460 5.7055 1.0278 9 6 4.7528 5.4264 -0.7101 10 1 5.1482 4.5463 -1.1956 11 6 5.4600 6.6094 -0.7452 12 7 5.0468 7.6434 -0.0454 13 14 7.0048 6.7437 -1.7868 14 1 6.6578 7.3053 -3.1170 15 1 7.9808 7.6365 -1.1119 16 1 7.6040 5.3960 -1.9595 17 6 2.4174 6.2600 -0.7210 18 7 1.1586 6.2891 0.0357 19 6 2.6815 3.2747 -1.1904 20 7 2.2457 2.0257 -1.1512 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.8593 3.7627 2.1375 27 1 5.5442 8.4759 -0.0704 28 1 2.8194 7.2704 -0.7965 29 1 2.2315 5.8672 -1.7206 30 1 1.3150 6.5887 0.9863 31 1 0.4761 6.8759 -0.4205 32 1 2.8503 3.7661 -2.1372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261275946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = 25.475927 kcal Electronic energy + Delta-G solvation = -14828.846231 eV Core-core repulsion = 12402.608930 eV Total energy + Delta-G solvation = -2426.237301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33259 -35.87427 -33.52826 -32.90190 -32.34055 -30.68813 -27.51696 -24.52638 -23.90813 -23.57844 -21.57202 -19.85888 -17.19492 -16.22561 -16.20049 -15.03075 -14.74890 -14.31330 -13.80140 -13.75083 -13.28970 -12.78933 -12.67943 -12.16736 -12.10243 -11.99806 -11.38494 -11.10173 -11.03409 -10.87889 -10.47206 -10.30187 -9.99592 -9.58907 -9.48090 -8.68172 -8.39179 -8.20329 -7.77878 -6.23885 -4.28783 1.80370 1.86933 3.19715 3.27893 3.31724 4.27284 4.49420 4.56355 4.84059 5.07991 5.44696 5.48268 5.53749 5.56718 5.59446 5.87083 5.96566 6.00753 6.18178 6.27045 6.39055 6.55078 6.76794 6.78990 7.20014 7.26938 7.57567 7.69999 7.78435 7.89784 8.15523 8.23598 8.75319 8.83253 9.36898 10.83820 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037084 B = 0.007770 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.855099 B = 3602.907917 C = 3989.650225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 C 0.274 3.726 4 N -0.521 5.521 5 C 0.130 3.870 6 C -0.109 4.109 7 C 0.089 3.911 8 H 0.044 0.956 9 C -0.517 4.517 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.071 3.929 18 N -0.859 5.859 19 C 0.144 3.856 20 N -0.522 5.522 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.156 0.844 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.332 0.668 31 H 0.322 0.678 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -6.511 0.072 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C 0.006 3.994 4 N -0.235 5.235 5 C -0.035 4.035 6 C -0.112 4.112 7 C 0.069 3.931 8 H 0.062 0.938 9 C -0.556 4.556 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.524 5.524 13 Si 0.721 3.279 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.060 4.060 18 N -0.386 5.386 19 C -0.021 4.021 20 N -0.236 5.236 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.174 0.826 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.214 -8.056 -0.032 10.174 hybrid contribution 1.448 2.317 -0.460 2.771 sum -4.766 -5.739 -0.493 7.476 Atomic orbital electron populations 1.21666 0.94400 1.01535 1.02307 1.20150 0.96166 0.89144 1.03104 1.22777 0.95375 0.97095 0.84129 1.68049 1.13983 1.10935 1.30537 1.22995 0.92529 0.89438 0.98583 1.22078 0.94748 1.00474 0.93948 1.17769 0.92757 0.84322 0.98236 0.93754 1.21047 1.03012 0.96527 1.34985 0.92211 1.24961 0.97623 0.95799 0.95145 1.69930 1.40193 1.02973 1.39282 0.86534 0.82633 0.78245 0.80444 1.20459 1.21106 1.19710 1.21975 0.87366 1.00888 0.95728 1.59032 1.12912 1.60271 1.06413 1.22959 0.91241 0.88866 0.99048 1.68091 1.14007 1.11019 1.30476 0.92518 0.92223 0.92519 0.90074 0.90093 0.82644 0.92682 0.92956 0.93432 0.85696 0.86795 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 37.16 0.37 -1.40 16 2 C -0.05 -0.67 6.37 -27.88 -0.18 -0.84 16 3 C 0.27 5.15 6.90 -157.20 -1.08 4.07 16 4 N -0.52 -10.23 10.33 -10.73 -0.11 -10.34 16 5 C 0.13 2.60 10.96 -17.21 -0.19 2.41 16 6 C -0.11 -2.30 4.48 -104.35 -0.47 -2.77 16 7 C 0.09 2.05 1.99 -92.92 -0.19 1.87 16 8 H 0.04 1.10 7.92 -51.93 -0.41 0.69 16 9 C -0.52 -13.17 8.23 -34.44 -0.28 -13.45 16 10 H 0.06 1.54 7.57 -52.48 -0.40 1.15 16 11 C 0.07 1.74 5.20 -17.82 -0.09 1.65 16 12 N -0.89 -23.55 12.01 55.43 0.67 -22.89 16 13 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 C 0.07 1.51 5.96 -3.82 -0.02 1.49 16 18 N -0.86 -15.79 9.33 -10.36 -0.10 -15.89 16 19 C 0.14 2.99 9.96 -17.20 -0.17 2.81 16 20 N -0.52 -10.43 10.33 -10.72 -0.11 -10.54 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.16 2.83 8.01 -52.48 -0.42 2.41 16 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.05 1.25 6.67 -51.93 -0.35 0.90 16 29 H 0.05 1.01 7.30 -51.93 -0.38 0.64 16 30 H 0.33 5.93 8.99 -39.29 -0.35 5.58 16 31 H 0.32 5.20 9.08 -39.29 -0.36 4.85 16 32 H 0.16 3.16 7.62 -52.49 -0.40 2.76 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -27.54 275.00 -7.15 -34.68 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.31 Total: 9.78 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.30 Total: -4.16 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.35 Total: -59.66 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.54 -7.15 -34.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.159 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds