Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46910 * 2 1 4 4 N 1.31802 * 119.12013 * 90.00209 * 3 2 1 5 5 C 1.32330 * 120.81769 * 180.02562 * 4 3 2 6 6 C 1.38594 * 119.10707 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.80279 * 180.02562 * 6 5 4 8 8 H 1.08991 * 109.47203 * 359.97438 * 7 6 5 9 9 C 1.50696 * 109.47390 * 119.99928 * 7 6 5 10 10 H 1.08007 * 119.99939 * 5.35940 * 9 7 6 11 11 C 1.37875 * 120.00345 * 185.08284 * 9 7 6 12 12 N 1.31515 * 119.99534 * 7.00703 * 11 9 7 13 13 Si 1.86795 * 120.00311 * 187.01098 * 11 9 7 14 14 H 1.48500 * 109.47698 * 94.26700 * 13 11 9 15 15 H 1.48502 * 109.47086 * 214.26662 * 13 11 9 16 16 H 1.48498 * 109.47228 * 334.26284 * 13 11 9 17 17 C 1.53005 * 109.46850 * 239.99789 * 7 6 5 18 18 N 1.46902 * 109.46721 * 64.83367 * 17 7 6 19 19 C 1.38604 * 118.39925 * 0.27546 * 6 5 4 20 20 N 1.31788 * 119.12607 * 270.02151 * 3 2 1 21 21 H 1.08999 * 109.47427 * 59.99344 * 1 2 3 22 22 H 1.09001 * 109.47346 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47320 * 299.99893 * 1 2 3 24 24 H 1.09002 * 109.46947 * 240.00478 * 2 1 3 25 25 H 1.08992 * 109.46688 * 120.00232 * 2 1 3 26 26 H 1.08005 * 120.44896 * 179.97438 * 5 4 3 27 27 H 0.97002 * 119.99824 * 180.02562 * 12 11 9 28 28 H 1.09004 * 109.46824 * 184.82914 * 17 7 6 29 29 H 1.09001 * 109.47309 * 304.83295 * 17 7 6 30 30 H 1.00896 * 111.00134 * 56.05006 * 18 17 7 31 31 H 1.00908 * 110.99409 * 179.97438 * 18 17 7 32 32 H 1.07997 * 120.44809 * 179.72983 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2461 2.0255 1.1514 5 6 2.6865 3.2728 1.1906 6 6 2.9230 3.9420 0.0002 7 6 3.4253 5.3628 0.0003 8 1 3.5460 5.7055 1.0278 9 6 4.7528 5.4264 -0.7101 10 1 5.1482 4.5463 -1.1956 11 6 5.4600 6.6094 -0.7452 12 7 5.0468 7.6434 -0.0454 13 14 7.0048 6.7437 -1.7868 14 1 6.6578 7.3053 -3.1170 15 1 7.9808 7.6365 -1.1119 16 1 7.6040 5.3960 -1.9595 17 6 2.4174 6.2600 -0.7210 18 7 1.1586 6.2891 0.0357 19 6 2.6815 3.2747 -1.1904 20 7 2.2457 2.0257 -1.1512 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.8593 3.7627 2.1375 27 1 5.5442 8.4759 -0.0704 28 1 2.8194 7.2704 -0.7965 29 1 2.2315 5.8672 -1.7206 30 1 1.3150 6.5887 0.9863 31 1 0.4761 6.8759 -0.4205 32 1 2.8503 3.7661 -2.1372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261275946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = 7.190116 kcal Electronic energy + Delta-G solvation = -14829.639163 eV Core-core repulsion = 12402.608930 eV Total energy + Delta-G solvation = -2427.030233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88322 -37.56782 -34.87763 -34.46083 -34.17554 -32.20661 -29.17923 -26.18626 -25.52779 -25.10203 -22.98292 -21.56093 -18.92185 -17.96819 -17.67747 -16.80952 -16.42647 -15.79094 -15.46479 -14.94110 -14.64024 -14.44598 -14.20499 -13.99082 -13.75320 -13.35617 -12.89938 -12.80982 -12.51769 -12.21805 -12.05361 -11.93745 -11.56684 -11.43260 -11.20035 -10.59828 -10.01430 -9.82524 -9.39104 -8.20284 -6.30621 0.24404 0.27083 1.39945 1.43520 1.51853 2.39633 2.97438 3.10419 3.17671 3.36027 3.95390 4.00556 4.20618 4.26876 4.35765 4.45118 4.47353 4.79168 4.89797 5.02428 5.03366 5.04919 5.26334 5.34405 5.40497 5.66392 5.73464 5.79131 6.10579 6.21525 6.44475 6.67516 6.84957 7.28439 7.37444 8.86317 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037084 B = 0.007770 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.855099 B = 3602.907917 C = 3989.650225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 C 0.271 3.729 4 N -0.526 5.526 5 C 0.128 3.872 6 C -0.125 4.125 7 C 0.097 3.903 8 H 0.021 0.979 9 C -0.530 4.530 10 H 0.051 0.949 11 C 0.027 3.973 12 N -0.910 5.910 13 Si 0.949 3.051 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.085 3.915 18 N -0.851 5.851 19 C 0.140 3.860 20 N -0.529 5.529 21 H 0.045 0.955 22 H 0.092 0.908 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.169 0.831 27 H 0.264 0.736 28 H 0.025 0.975 29 H 0.046 0.954 30 H 0.337 0.663 31 H 0.338 0.662 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 -7.771 -0.146 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C 0.003 3.997 4 N -0.240 5.240 5 C -0.037 4.037 6 C -0.129 4.129 7 C 0.077 3.923 8 H 0.039 0.961 9 C -0.568 4.568 10 H 0.069 0.931 11 C -0.174 4.174 12 N -0.548 5.548 13 Si 0.775 3.225 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.046 4.046 18 N -0.380 5.380 19 C -0.026 4.026 20 N -0.243 5.243 21 H 0.065 0.935 22 H 0.111 0.889 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.186 0.814 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.712 -9.320 -0.253 11.488 hybrid contribution 1.549 2.639 -0.362 3.081 sum -5.163 -6.682 -0.615 8.466 Atomic orbital electron populations 1.21631 0.92848 1.03428 1.01331 1.20369 0.97344 0.86420 1.04481 1.23737 0.93750 0.98671 0.83525 1.68176 1.14314 1.10592 1.30907 1.23238 0.91895 0.89759 0.98821 1.21889 0.96491 0.99778 0.94747 1.17557 0.92410 0.85809 0.96567 0.96071 1.21278 1.04245 0.96238 1.35048 0.93111 1.25589 1.00125 0.95608 0.96039 1.70020 1.41230 1.03281 1.40255 0.85674 0.79643 0.77949 0.79221 1.19850 1.20955 1.19805 1.21655 0.88159 0.98889 0.95850 1.58931 1.11746 1.60809 1.06504 1.23033 0.91176 0.89369 0.99003 1.68190 1.14455 1.10609 1.31080 0.93536 0.88938 0.93400 0.88768 0.88623 0.81363 0.92689 0.95628 0.93517 0.85195 0.85063 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.89 71.98 0.71 -2.28 16 2 C -0.05 -1.23 6.37 29.85 0.19 -1.04 16 3 C 0.27 9.71 6.90 138.75 0.96 10.67 16 4 N -0.53 -19.91 10.33 -187.85 -1.94 -21.85 16 5 C 0.13 5.05 10.96 84.70 0.93 5.98 16 6 C -0.13 -5.29 4.48 -19.69 -0.09 -5.38 16 7 C 0.10 4.49 1.99 -12.29 -0.02 4.47 16 8 H 0.02 1.07 7.92 -2.39 -0.02 1.05 16 9 C -0.53 -27.21 8.23 25.60 0.21 -27.00 16 10 H 0.05 2.64 7.57 -2.91 -0.02 2.62 16 11 C 0.03 1.39 5.20 84.65 0.44 1.83 16 12 N -0.91 -48.79 12.01 21.45 0.26 -48.53 16 13 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C 0.09 3.68 5.96 86.30 0.51 4.20 16 18 N -0.85 -30.77 9.33 -186.70 -1.74 -32.51 16 19 C 0.14 5.71 9.96 84.70 0.84 6.55 16 20 N -0.53 -20.51 10.33 -187.84 -1.94 -22.45 16 21 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.17 6.04 8.01 -2.91 -0.02 6.02 16 27 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.03 1.24 6.67 -2.39 -0.02 1.22 16 29 H 0.05 2.00 7.30 -2.39 -0.02 1.98 16 30 H 0.34 11.85 8.99 -89.70 -0.81 11.04 16 31 H 0.34 10.53 9.08 -89.69 -0.81 9.71 16 32 H 0.16 6.38 7.62 -2.91 -0.02 6.36 16 Total: -1.00 -57.43 275.00 0.85 -56.58 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.49 Total: 27.23 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.68 Total: -1.99 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.37 Total: -125.34 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -57.43 0.85 -56.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.766 kcal (2) G-P(sol) polarization free energy of solvation -57.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds