Wall clock time and date at job start Mon Mar 30 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47454 * 2 1 4 4 C 1.50700 * 109.47663 * 239.99250 * 2 1 3 5 5 H 1.07999 * 120.00387 * 240.00838 * 4 2 1 6 6 C 1.37879 * 119.99410 * 60.00092 * 4 2 1 7 7 N 1.31510 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99762 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47168 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47421 * 120.00028 * 8 6 4 11 11 H 1.48497 * 109.47235 * 240.00179 * 8 6 4 12 12 C 1.50703 * 109.46764 * 119.99387 * 2 1 3 13 13 C 1.39664 * 125.83400 * 35.00490 * 12 2 1 14 14 C 1.36671 * 107.90890 * 180.13984 * 13 12 2 15 15 N 1.35071 * 107.23119 * 359.63269 * 14 13 12 16 16 N 1.30786 * 125.83324 * 215.01969 * 12 2 1 17 17 C 1.47413 * 109.14479 * 180.67808 * 15 14 13 18 18 C 1.54596 * 103.12371 * 15.70334 * 17 15 14 19 19 N 1.39656 * 141.08894 * 179.60942 * 14 13 12 20 20 C 1.46902 * 110.99983 * 283.32261 * 19 14 13 21 21 H 1.09010 * 109.46493 * 60.00351 * 1 2 3 22 22 H 1.08999 * 109.47454 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47426 * 300.00589 * 1 2 3 24 24 H 0.97006 * 119.99806 * 179.97438 * 7 6 4 25 25 H 1.08005 * 126.04557 * 0.10110 * 13 12 2 26 26 H 1.08996 * 110.67719 * 257.30223 * 17 15 14 27 27 H 1.08996 * 110.71482 * 134.11714 * 17 15 14 28 28 H 1.09002 * 110.94105 * 217.03229 * 18 17 15 29 29 H 1.08997 * 110.93737 * 93.37993 * 18 17 15 30 30 H 1.09000 * 109.46994 * 301.24671 * 20 19 14 31 31 H 1.09000 * 109.47012 * 61.24206 * 20 19 14 32 32 H 1.08993 * 109.47193 * 181.24022 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3216 -1.1207 -4.0078 9 1 3.1467 -2.2872 -3.6035 10 1 1.1663 -1.5871 -4.8160 11 1 3.1469 -0.1878 -4.8163 12 6 2.0322 -0.7103 1.2306 13 6 1.4303 -1.8128 1.8413 14 6 2.1868 -2.1573 2.9261 15 7 3.2278 -1.2982 2.9771 16 7 3.1061 -0.3995 1.9093 17 6 4.0835 -1.6432 4.1268 18 6 3.6146 -3.0688 4.4981 19 7 2.2309 -3.0838 3.9701 20 6 1.2629 -2.7399 5.0203 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7097 1.1615 -3.4845 25 1 0.5264 -2.3054 1.5144 26 1 3.9128 -0.9541 4.9540 27 1 5.1344 -1.6467 3.8380 28 1 3.6208 -3.2119 5.5787 29 1 4.2283 -3.8217 4.0038 30 1 1.4818 -1.7434 5.4039 31 1 0.2553 -2.7562 4.6051 32 1 1.3336 -3.4650 5.8311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:06 Heat of formation + Delta-G solvation = 108.575237 kcal Electronic energy + Delta-G solvation = -15007.850106 eV Core-core repulsion = 12585.216262 eV Total energy + Delta-G solvation = -2422.633844 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.50789 -37.52507 -34.14814 -32.31182 -30.56913 -28.83149 -27.49499 -25.68770 -25.04474 -22.83944 -21.39041 -19.56524 -18.61858 -16.62985 -16.15427 -15.45751 -15.00063 -14.52387 -14.41882 -13.73753 -13.24782 -12.94819 -12.81894 -12.44174 -12.06728 -11.90690 -11.44799 -11.36162 -10.88343 -10.70926 -10.35616 -10.21567 -9.84906 -9.73944 -9.28788 -8.97150 -8.31401 -7.98635 -7.66386 -5.95478 -4.00730 2.39227 2.74469 3.35008 3.42095 3.47532 3.56600 3.70924 4.37611 4.51336 4.65513 4.92994 5.15722 5.24454 5.29505 5.35746 5.53672 5.68262 5.85146 6.01949 6.13954 6.56686 6.59959 6.89488 6.93480 7.09343 7.20979 7.57450 7.61634 7.77538 7.95021 8.14373 8.42715 8.69650 9.00433 9.62724 11.10883 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045619 B = 0.007179 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.630279 B = 3899.163802 C = 4070.180733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.114 3.886 3 H 0.043 0.957 4 C -0.499 4.499 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.137 3.863 13 C -0.233 4.233 14 C 0.200 3.800 15 N -0.433 5.433 16 N -0.282 5.282 17 C 0.104 3.896 18 C 0.037 3.963 19 N -0.468 5.468 20 C 0.026 3.974 21 H 0.089 0.911 22 H 0.033 0.967 23 H 0.010 0.990 24 H 0.260 0.740 25 H 0.143 0.857 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -6.585 14.441 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.061 0.939 4 C -0.539 4.539 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.030 4.030 13 C -0.264 4.264 14 C -0.019 4.019 15 N -0.219 5.219 16 N -0.102 5.102 17 C -0.020 4.020 18 C -0.091 4.091 19 N -0.189 5.189 20 C -0.121 4.121 21 H 0.107 0.893 22 H 0.052 0.948 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.161 0.839 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.930 -6.087 14.322 15.835 hybrid contribution -0.048 -0.371 -0.514 0.636 sum 2.883 -6.457 13.808 15.513 Atomic orbital electron populations 1.21759 0.96946 0.99672 1.00452 1.17398 0.92722 0.95194 0.85383 0.93884 1.21004 1.31033 1.12301 0.89526 0.92489 1.24908 0.95100 0.95026 0.98846 1.69893 1.36893 1.22900 1.23347 0.86469 0.78627 0.79691 0.82852 1.19803 1.20935 1.21032 1.23288 0.90203 0.93746 0.95714 1.20430 1.05165 1.03865 0.96961 1.20830 0.94039 0.90419 0.96582 1.50618 1.22276 1.25361 1.23619 1.77465 1.22009 1.12253 0.98516 1.22716 0.96229 0.96742 0.86271 1.23720 0.88643 0.95342 1.01406 1.60468 1.05396 1.45518 1.07524 1.22546 0.96618 0.99487 0.93467 0.89262 0.94822 0.97078 0.92960 0.83908 0.90129 0.88669 0.88007 0.88107 0.94926 0.90172 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.56 37.16 0.32 -2.88 16 2 C 0.11 3.03 2.76 -92.92 -0.26 2.78 16 3 H 0.04 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.50 -14.32 8.55 -34.44 -0.29 -14.62 16 5 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.14 3.36 6.05 -82.50 -0.50 2.86 16 13 C -0.23 -5.08 10.02 -39.62 -0.40 -5.48 16 14 C 0.20 3.82 6.87 -152.95 -1.05 2.77 16 15 N -0.43 -8.49 4.95 -58.77 -0.29 -8.78 16 16 N -0.28 -6.80 12.69 33.62 0.43 -6.38 16 17 C 0.10 1.35 7.98 -2.70 -0.02 1.33 16 18 C 0.04 0.39 7.09 -2.32 -0.02 0.37 16 19 N -0.47 -6.71 5.40 -178.86 -0.97 -7.68 16 20 C 0.03 0.29 9.28 60.07 0.56 0.85 16 21 H 0.09 2.37 6.07 -51.92 -0.32 2.05 16 22 H 0.03 0.78 7.30 -51.93 -0.38 0.40 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.14 2.94 7.42 -52.48 -0.39 2.55 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.10 0.69 7.77 -51.93 -0.40 0.29 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -32.77 267.38 -7.36 -40.13 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.41 Total: -2.73 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.75 Total: -10.36 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.20 Total: -47.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.77 -7.36 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.707 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds