Wall clock time and date at job start Mon Mar 30 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47454 * 2 1 4 4 C 1.50700 * 109.47663 * 239.99250 * 2 1 3 5 5 H 1.07999 * 120.00387 * 240.00838 * 4 2 1 6 6 C 1.37879 * 119.99410 * 60.00092 * 4 2 1 7 7 N 1.31510 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99762 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47168 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47421 * 120.00028 * 8 6 4 11 11 H 1.48497 * 109.47235 * 240.00179 * 8 6 4 12 12 C 1.50703 * 109.46764 * 119.99387 * 2 1 3 13 13 C 1.39664 * 125.83400 * 35.00490 * 12 2 1 14 14 C 1.36671 * 107.90890 * 180.13984 * 13 12 2 15 15 N 1.35071 * 107.23119 * 359.63269 * 14 13 12 16 16 N 1.30786 * 125.83324 * 215.01969 * 12 2 1 17 17 C 1.47413 * 109.14479 * 180.67808 * 15 14 13 18 18 C 1.54596 * 103.12371 * 15.70334 * 17 15 14 19 19 N 1.39656 * 141.08894 * 179.60942 * 14 13 12 20 20 C 1.46902 * 110.99983 * 283.32261 * 19 14 13 21 21 H 1.09010 * 109.46493 * 60.00351 * 1 2 3 22 22 H 1.08999 * 109.47454 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47426 * 300.00589 * 1 2 3 24 24 H 0.97006 * 119.99806 * 179.97438 * 7 6 4 25 25 H 1.08005 * 126.04557 * 0.10110 * 13 12 2 26 26 H 1.08996 * 110.67719 * 257.30223 * 17 15 14 27 27 H 1.08996 * 110.71482 * 134.11714 * 17 15 14 28 28 H 1.09002 * 110.94105 * 217.03229 * 18 17 15 29 29 H 1.08997 * 110.93737 * 93.37993 * 18 17 15 30 30 H 1.09000 * 109.46994 * 301.24671 * 20 19 14 31 31 H 1.09000 * 109.47012 * 61.24206 * 20 19 14 32 32 H 1.08993 * 109.47193 * 181.24022 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3216 -1.1207 -4.0078 9 1 3.1467 -2.2872 -3.6035 10 1 1.1663 -1.5871 -4.8160 11 1 3.1469 -0.1878 -4.8163 12 6 2.0322 -0.7103 1.2306 13 6 1.4303 -1.8128 1.8413 14 6 2.1868 -2.1573 2.9261 15 7 3.2278 -1.2982 2.9771 16 7 3.1061 -0.3995 1.9093 17 6 4.0835 -1.6432 4.1268 18 6 3.6146 -3.0688 4.4981 19 7 2.2309 -3.0838 3.9701 20 6 1.2629 -2.7399 5.0203 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7097 1.1615 -3.4845 25 1 0.5264 -2.3054 1.5144 26 1 3.9128 -0.9541 4.9540 27 1 5.1344 -1.6467 3.8380 28 1 3.6208 -3.2119 5.5787 29 1 4.2283 -3.8217 4.0038 30 1 1.4818 -1.7434 5.4039 31 1 0.2553 -2.7562 4.6051 32 1 1.3336 -3.4650 5.8311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:06 Heat of formation + Delta-G solvation = 85.703286 kcal Electronic energy + Delta-G solvation = -15008.841908 eV Core-core repulsion = 12585.216262 eV Total energy + Delta-G solvation = -2423.625647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.93875 -38.91486 -36.10522 -33.76617 -32.38339 -30.36382 -28.85013 -27.26015 -26.72680 -24.39426 -22.84247 -20.98898 -20.39412 -18.31941 -17.80178 -16.82107 -16.67932 -16.10569 -15.70649 -15.02282 -14.69620 -14.62268 -14.03855 -13.90655 -13.52169 -13.27199 -13.12093 -12.82854 -12.67171 -12.31930 -12.29025 -12.16829 -11.80922 -11.48225 -11.13299 -10.59998 -10.47394 -9.56946 -9.16875 -8.11478 -6.25677 0.88255 1.39964 1.41739 1.43074 1.55274 1.93103 2.43585 2.48083 3.15591 3.40059 3.82891 3.89862 4.17764 4.31902 4.37304 4.47118 4.53254 4.70370 4.83166 4.89430 4.94914 4.99293 5.13107 5.16304 5.20694 5.53217 5.68762 5.82266 5.85902 6.04694 6.25005 6.31063 6.78561 7.01992 7.41309 8.94234 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045619 B = 0.007179 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.630279 B = 3899.163802 C = 4070.180733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.114 3.886 3 H 0.004 0.996 4 C -0.522 4.522 5 H 0.041 0.959 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.277 1.277 12 C 0.115 3.885 13 C -0.270 4.270 14 C 0.224 3.776 15 N -0.432 5.432 16 N -0.327 5.327 17 C 0.088 3.912 18 C 0.044 3.956 19 N -0.475 5.475 20 C 0.025 3.975 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.027 0.973 24 H 0.266 0.734 25 H 0.144 0.856 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.154 0.846 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -8.474 16.397 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.022 0.978 4 C -0.561 4.561 5 H 0.059 0.941 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.195 1.195 11 H -0.203 1.203 12 C -0.050 4.050 13 C -0.301 4.301 14 C 0.002 3.998 15 N -0.219 5.219 16 N -0.149 5.149 17 C -0.033 4.033 18 C -0.082 4.082 19 N -0.197 5.197 20 C -0.121 4.121 21 H 0.086 0.914 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.162 0.838 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.172 0.828 29 H 0.126 0.874 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.588 -7.972 16.301 18.497 hybrid contribution -0.173 0.170 -0.941 0.972 sum 3.415 -7.801 15.360 17.562 Atomic orbital electron populations 1.21551 0.95724 0.99947 1.00077 1.17188 0.93766 0.93179 0.86537 0.97752 1.21151 1.31593 1.12272 0.91039 0.94069 1.25680 0.95077 0.95687 1.01601 1.70002 1.37260 1.23742 1.24313 0.85465 0.78398 0.78460 0.79081 1.19931 1.19543 1.20309 1.22879 0.91335 0.95082 0.95687 1.20386 1.06453 1.04385 0.98861 1.21076 0.92273 0.90048 0.96361 1.51046 1.23492 1.23939 1.23422 1.77252 1.22377 1.14657 1.00633 1.23351 0.96333 0.98893 0.84693 1.24014 0.86122 0.93579 1.04499 1.60580 1.08133 1.43427 1.07581 1.22689 0.95245 1.00939 0.93270 0.91397 0.94084 0.95445 0.92514 0.83825 0.87667 0.87318 0.82826 0.87400 0.94792 0.91173 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 8.56 71.98 0.62 -5.25 16 2 C 0.11 6.40 2.76 -12.29 -0.03 6.37 16 3 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 4 C -0.52 -31.14 8.55 25.60 0.22 -30.92 16 5 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -53.96 11.32 21.45 0.24 -53.71 16 8 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 9 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 C 0.11 5.87 6.05 43.06 0.26 6.13 16 13 C -0.27 -12.00 10.02 22.25 0.22 -11.78 16 14 C 0.22 8.28 6.87 131.44 0.90 9.18 16 15 N -0.43 -16.54 4.95 -339.84 -1.68 -18.22 16 16 N -0.33 -16.21 12.69 -47.53 -0.60 -16.81 16 17 C 0.09 2.00 7.98 86.75 0.69 2.70 16 18 C 0.04 0.73 7.09 86.61 0.61 1.34 16 19 N -0.47 -12.01 5.40 -719.78 -3.89 -15.89 16 20 C 0.02 0.45 9.28 127.69 1.19 1.64 16 21 H 0.07 3.74 6.07 -2.38 -0.01 3.72 16 22 H 0.04 1.97 7.30 -2.39 -0.02 1.95 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 25 H 0.14 6.10 7.42 -2.91 -0.02 6.08 16 26 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.15 1.02 7.77 -2.39 -0.02 1.00 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.12 1.23 8.11 -2.39 -0.02 1.21 16 Total: -1.00 -74.67 267.38 2.32 -72.34 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.10 Total: 3.93 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 5.13 Total: -19.05 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -5.93 Total: -104.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.67 2.32 -72.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.044 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds