Wall clock time and date at job start Mon Mar 30 2020 03:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.27708 * 2 1 4 4 C 1.54482 * 110.26117 * 238.01320 * 2 1 3 5 5 C 1.54538 * 101.73309 * 215.09585 * 4 2 1 6 6 H 1.08992 * 110.59001 * 266.51460 * 5 4 2 7 7 N 1.46900 * 110.47562 * 143.94971 * 5 4 2 8 8 C 1.46895 * 110.99778 * 158.71953 * 7 5 4 9 9 C 1.50706 * 109.47245 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99653 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00147 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00121 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99942 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47103 * 90.00257 * 13 11 9 15 15 H 1.48501 * 109.46899 * 210.00138 * 13 11 9 16 16 H 1.48499 * 109.47178 * 329.99986 * 13 11 9 17 17 C 1.51567 * 104.24656 * 25.26021 * 5 4 2 18 18 N 1.30905 * 141.44807 * 163.35778 * 17 5 4 19 19 C 1.34002 * 109.30584 * 180.25616 * 18 17 5 20 20 C 1.34562 * 108.03204 * 359.94503 * 19 18 17 21 21 N 1.34812 * 109.94311 * 343.48384 * 17 5 4 22 22 H 1.09004 * 109.47188 * 299.50019 * 1 2 3 23 23 H 1.08991 * 109.47501 * 59.50122 * 1 2 3 24 24 H 1.09005 * 109.47364 * 179.50399 * 1 2 3 25 25 H 1.08997 * 110.89501 * 97.02949 * 4 2 1 26 26 H 1.09001 * 111.07674 * 333.24429 * 4 2 1 27 27 H 1.00897 * 111.00196 * 282.67268 * 7 5 4 28 28 H 1.09001 * 109.47420 * 300.00240 * 8 7 5 29 29 H 1.09003 * 109.47428 * 60.00331 * 8 7 5 30 30 H 0.96998 * 120.00386 * 179.97438 * 12 11 9 31 31 H 1.07996 * 125.98944 * 179.97438 * 19 18 17 32 32 H 1.08001 * 126.58431 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0649 -0.7677 -1.2292 5 6 3.3351 -1.4346 -0.6548 6 1 4.2109 -0.8118 -0.8369 7 7 3.5243 -2.7688 -1.2397 8 6 4.9225 -3.2029 -1.1193 9 6 5.0776 -4.5722 -1.7294 10 1 4.2229 -5.0703 -2.1627 11 6 6.3105 -5.1895 -1.7333 12 7 6.4458 -6.3846 -2.2652 13 14 7.7886 -4.3282 -0.9832 14 1 7.8919 -4.6842 0.4548 15 1 9.0225 -4.7575 -1.6892 16 1 7.6266 -2.8583 -1.1189 17 6 3.0605 -1.5415 0.8320 18 7 3.4781 -2.1583 1.9084 19 6 2.7418 -1.7666 2.9573 20 6 1.8350 -0.8741 2.5195 21 7 2.0385 -0.7300 1.1703 22 1 -0.3634 0.5061 0.8945 23 1 -0.3634 0.5215 -0.8854 24 1 -0.3634 -1.0277 -0.0089 25 1 2.3165 -0.0808 -2.0373 26 1 1.3487 -1.5175 -1.5653 27 1 2.8998 -3.4401 -0.8185 28 1 5.5683 -2.4974 -1.6421 29 1 5.2021 -3.2401 -0.0665 30 1 7.3132 -6.8188 -2.2683 31 1 2.8564 -2.1072 3.9757 32 1 1.0901 -0.3681 3.1157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306731373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:07 Heat of formation + Delta-G solvation = 50.920058 kcal Electronic energy + Delta-G solvation = -14952.415802 eV Core-core repulsion = 12527.281841 eV Total energy + Delta-G solvation = -2425.133961 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.41845 -38.33182 -36.45926 -34.53530 -31.90618 -31.24647 -29.37570 -28.07661 -24.82731 -23.21726 -22.95746 -21.43689 -20.78669 -18.94137 -18.22489 -16.66406 -16.53386 -15.88918 -15.56995 -15.25635 -14.92942 -14.66006 -14.52883 -14.02040 -13.81788 -13.42296 -13.28803 -12.99552 -12.71083 -12.57545 -12.16217 -11.87659 -11.77132 -11.42953 -10.84877 -10.82744 -10.54901 -9.62208 -9.13819 -8.30792 -6.33915 1.09075 1.32986 1.36001 1.46040 1.85993 2.16290 2.33626 2.90355 3.04070 3.37883 3.51723 3.82500 3.93269 4.11268 4.25011 4.29954 4.53821 4.67613 4.73980 4.77729 4.82398 5.00882 5.01832 5.14271 5.20172 5.40071 5.50587 5.87675 5.90140 6.17095 6.40074 6.53537 6.72327 7.23049 7.30225 8.85989 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038849 B = 0.007605 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.557609 B = 3680.777348 C = 4066.607547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.120 0.880 4 C -0.103 4.103 5 C 0.153 3.847 6 H 0.098 0.902 7 N -0.657 5.657 8 C 0.176 3.824 9 C -0.525 4.525 10 H 0.040 0.960 11 C 0.012 3.988 12 N -0.946 5.946 13 Si 0.947 3.053 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.251 1.251 17 C 0.132 3.868 18 N -0.531 5.531 19 C -0.059 4.059 20 C -0.024 4.024 21 N -0.469 5.469 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.335 0.665 28 H 0.029 0.971 29 H -0.016 1.016 30 H 0.268 0.732 31 H 0.186 0.814 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 18.488 6.434 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 H 0.138 0.862 4 C -0.142 4.142 5 C 0.040 3.960 6 H 0.116 0.884 7 N -0.285 5.285 8 C 0.048 3.952 9 C -0.563 4.563 10 H 0.058 0.942 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.174 1.174 17 C -0.133 4.133 18 N -0.251 5.251 19 C -0.207 4.207 20 C -0.157 4.157 21 N -0.153 5.153 22 H 0.091 0.909 23 H 0.124 0.876 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.110 0.890 27 H 0.152 0.848 28 H 0.047 0.953 29 H 0.001 0.999 30 H 0.077 0.923 31 H 0.203 0.797 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.791 18.195 5.749 22.431 hybrid contribution 0.373 -0.204 1.468 1.528 sum -11.418 17.991 7.217 22.497 Atomic orbital electron populations 1.22060 0.90922 1.03019 1.04845 1.22487 0.97398 0.96618 0.80983 0.86218 1.22947 0.94466 0.99876 0.96875 1.21195 1.00501 0.93309 0.80973 0.88429 1.60670 1.07006 1.02668 1.58123 1.19765 0.87144 0.94511 0.93806 1.21302 0.95730 1.01465 1.37813 0.94208 1.25778 1.02009 0.95387 0.95393 1.70035 1.25562 1.15918 1.47123 0.85716 0.78570 0.80135 0.78477 1.20199 1.19969 1.17448 1.25741 0.92962 0.95989 0.98575 1.69851 1.29654 1.26762 0.98825 1.22799 0.97344 1.01690 0.98861 1.22848 1.05250 1.05179 0.82394 1.46958 1.27407 1.33036 1.07902 0.90937 0.87607 0.92994 0.85101 0.88997 0.84752 0.95289 0.99863 0.92321 0.79718 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.45 71.98 0.68 -1.14 16 2 C 0.13 2.17 4.13 45.40 0.19 2.36 16 3 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.10 -2.16 6.38 31.62 0.20 -1.96 16 5 C 0.15 5.04 3.23 44.97 0.15 5.18 16 6 H 0.10 3.18 7.87 -2.39 -0.02 3.16 16 7 N -0.66 -27.86 6.29 -495.31 -3.11 -30.98 16 8 C 0.18 9.04 4.35 85.56 0.37 9.41 16 9 C -0.52 -31.99 9.87 25.60 0.25 -31.74 16 10 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 11 C 0.01 0.73 5.47 84.65 0.46 1.20 16 12 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 13 Si 0.95 47.19 27.47 68.60 1.88 49.08 16 14 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 17 C 0.13 4.70 7.86 138.36 1.09 5.78 16 18 N -0.53 -21.66 11.26 -187.34 -2.11 -23.76 16 19 C -0.06 -1.85 11.86 83.52 0.99 -0.86 16 20 C -0.02 -0.58 12.00 83.01 1.00 0.42 16 21 N -0.47 -12.23 3.27 -486.79 -1.59 -13.82 16 22 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 23 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 2.01 7.87 -2.39 -0.02 1.99 16 27 H 0.34 14.98 8.48 -89.70 -0.76 14.22 16 28 H 0.03 1.46 7.14 -2.39 -0.02 1.44 16 29 H -0.02 -0.89 7.52 -2.39 -0.02 -0.91 16 30 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 31 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.21 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -77.86 269.67 1.04 -76.82 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.29 Total: 14.89 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.38 Total: -11.35 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -6.52 Total: -129.45 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.88 Total: 49.08 kcal Total: -77.86 1.04 -76.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306731373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.742 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds