Wall clock time and date at job start Mon Mar 30 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.20860 * 2 1 4 4 C 1.54385 * 110.23279 * 121.99732 * 2 1 3 5 5 C 1.54541 * 101.77165 * 144.73182 * 4 2 1 6 6 H 1.08999 * 110.57990 * 93.58202 * 5 4 2 7 7 N 1.46893 * 110.48061 * 216.14500 * 5 4 2 8 8 C 1.46903 * 111.00158 * 201.28320 * 7 5 4 9 9 C 1.50699 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00511 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99783 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99573 * 180.27665 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 C 1.51568 * 104.24389 * 334.84164 * 5 4 2 18 18 N 1.30907 * 141.43944 * 196.54300 * 17 5 4 19 19 C 1.34010 * 109.29853 * 179.80284 * 18 17 5 20 20 C 1.34567 * 108.03211 * 0.09642 * 19 18 17 21 21 N 1.34813 * 109.94493 * 16.53351 * 17 5 4 22 22 H 1.08999 * 109.47169 * 180.44900 * 1 2 3 23 23 H 1.09004 * 109.47071 * 300.44608 * 1 2 3 24 24 H 1.09002 * 109.47480 * 60.44634 * 1 2 3 25 25 H 1.09006 * 110.96729 * 26.61930 * 4 2 1 26 26 H 1.08991 * 110.96912 * 262.86028 * 4 2 1 27 27 H 1.00902 * 110.99870 * 77.32591 * 7 5 4 28 28 H 1.08992 * 109.47265 * 60.00170 * 8 7 5 29 29 H 1.09005 * 109.46357 * 299.99849 * 8 7 5 30 30 H 0.97004 * 119.99485 * 179.72881 * 12 11 9 31 31 H 1.07995 * 125.98576 * 180.02562 * 19 18 17 32 32 H 1.07998 * 126.58564 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0639 -0.7676 1.2285 5 6 3.3319 -1.4388 0.6542 6 1 4.2097 -0.8189 0.8367 7 7 3.5165 -2.7737 1.2388 8 6 4.9133 -3.2126 1.1187 9 6 5.0633 -4.5830 1.7274 10 1 4.2068 -5.0783 2.1606 11 6 6.2941 -5.2046 1.7313 12 7 6.4238 -6.4028 2.2576 13 14 7.7752 -4.3483 0.9815 14 1 8.4581 -3.5385 2.0222 15 1 8.7172 -5.3648 0.4481 16 1 7.3279 -3.4608 -0.1219 17 6 3.0572 -1.5444 -0.8326 18 7 3.4739 -2.1614 -1.9093 19 6 2.7392 -1.7668 -2.9583 20 6 1.8350 -0.8715 -2.5204 21 7 2.0384 -0.7289 -1.1710 22 1 -0.3633 -1.0276 0.0081 23 1 -0.3633 0.5208 0.8860 24 1 -0.3634 0.5069 -0.8940 25 1 1.3449 -1.5150 1.5641 26 1 2.3175 -0.0819 2.0369 27 1 2.8897 -3.4428 0.8175 28 1 5.5613 -2.5094 1.6418 29 1 5.1928 -3.2504 0.0658 30 1 7.2889 -6.8418 2.2568 31 1 2.8536 -2.1068 -3.9769 32 1 1.0920 -0.3628 -3.1166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306731374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:10 Heat of formation + Delta-G solvation = 76.207675 kcal Electronic energy + Delta-G solvation = -14953.049130 eV Core-core repulsion = 12529.011722 eV Total energy + Delta-G solvation = -2424.037407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.26890 -37.12196 -34.94803 -32.41992 -30.49572 -30.16143 -28.02198 -26.48052 -23.63154 -21.86754 -21.19624 -20.33434 -19.56142 -17.21417 -16.68439 -15.39990 -14.86243 -14.35470 -14.23462 -13.89660 -13.74976 -13.50244 -12.90401 -12.51862 -12.41068 -12.24653 -12.08625 -11.65985 -11.44263 -10.98336 -10.58653 -10.36637 -9.75184 -9.57405 -9.39918 -9.22896 -8.51669 -8.26217 -7.57098 -5.97709 -3.95006 2.23153 2.83715 3.37450 3.41686 3.44921 3.52988 4.04217 4.43952 4.52227 4.53587 4.70551 4.91105 5.11748 5.22831 5.31775 5.36414 5.46778 5.51607 5.70355 5.76033 5.84268 5.91346 6.07471 6.50478 6.82940 7.06228 7.18733 7.28021 7.62121 7.85463 8.23414 8.43583 8.69006 9.08747 9.64525 11.15571 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.007608 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.855531 B = 3679.692021 C = 4065.437455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.093 0.907 4 C -0.114 4.114 5 C 0.161 3.839 6 H 0.100 0.900 7 N -0.656 5.656 8 C 0.159 3.841 9 C -0.513 4.513 10 H 0.078 0.922 11 C 0.070 3.930 12 N -0.902 5.902 13 Si 0.874 3.126 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.167 3.833 18 N -0.472 5.472 19 C -0.026 4.026 20 C -0.049 4.049 21 N -0.478 5.478 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.343 0.657 28 H 0.020 0.980 29 H 0.005 0.995 30 H 0.263 0.737 31 H 0.170 0.830 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 15.486 -5.875 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.111 0.889 4 C -0.153 4.153 5 C 0.047 3.953 6 H 0.118 0.882 7 N -0.285 5.285 8 C 0.032 3.968 9 C -0.552 4.552 10 H 0.096 0.904 11 C -0.132 4.132 12 N -0.542 5.542 13 Si 0.701 3.299 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.187 1.187 17 C -0.098 4.098 18 N -0.191 5.191 19 C -0.175 4.175 20 C -0.181 4.181 21 N -0.162 5.162 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.162 0.838 28 H 0.038 0.962 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.187 0.813 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.738 15.153 -5.219 19.291 hybrid contribution 0.197 0.762 -1.586 1.771 sum -10.540 15.915 -6.805 20.266 Atomic orbital electron populations 1.22079 0.93181 1.03422 1.02877 1.22125 0.95711 0.96284 0.83360 0.88917 1.22895 0.97304 0.99654 0.95464 1.20969 0.97898 0.95721 0.80752 0.88207 1.60742 1.09757 1.00885 1.57156 1.20113 0.84280 0.96549 0.95854 1.21009 0.96748 0.99472 1.37946 0.90428 1.24861 0.98666 0.94732 0.94914 1.69903 1.24587 1.13930 1.45733 0.86854 0.82921 0.79797 0.80286 1.20311 1.21256 1.18683 1.25845 0.91171 0.94149 0.98617 1.70001 1.27232 1.24856 0.96968 1.22348 0.96418 1.00083 0.98612 1.22234 1.06229 1.07048 0.82573 1.46673 1.28849 1.33828 1.06895 0.91426 0.90267 0.92199 0.88645 0.88121 0.83841 0.96161 0.97736 0.92732 0.81322 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.45 37.16 0.35 -0.94 16 2 C 0.13 1.34 4.13 -66.93 -0.28 1.07 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -1.34 6.38 -25.20 -0.16 -1.51 16 5 C 0.16 2.70 3.23 -67.63 -0.22 2.48 16 6 H 0.10 1.66 7.87 -51.93 -0.41 1.26 16 7 N -0.66 -13.70 6.29 -107.91 -0.68 -14.38 16 8 C 0.16 4.02 4.35 -4.97 -0.02 3.99 16 9 C -0.51 -15.13 9.87 -34.44 -0.34 -15.47 16 10 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 11 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 13 Si 0.87 22.51 27.47 -169.99 -4.67 17.84 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 17 C 0.17 3.02 7.86 -154.86 -1.22 1.81 16 18 N -0.47 -9.58 11.26 -10.56 -0.12 -9.70 16 19 C -0.03 -0.41 11.86 -17.90 -0.21 -0.63 16 20 C -0.05 -0.67 12.00 -16.45 -0.20 -0.86 16 21 N -0.48 -6.83 3.27 -105.27 -0.34 -7.18 16 22 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.10 1.14 7.86 -51.93 -0.41 0.73 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.34 7.38 8.48 -39.29 -0.33 7.05 16 28 H 0.02 0.51 7.51 -51.93 -0.39 0.12 16 29 H 0.00 0.13 7.15 -51.93 -0.37 -0.24 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 269.65 15.07 4.06 4.06 Total: -1.00 -34.45 269.65 -7.82 -42.28 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.46 Total: 2.82 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.39 Total: -8.05 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.37 Total: -58.95 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.45 -7.82 -42.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306731374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.484 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds