Wall clock time and date at job start Mon Mar 30 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.20860 * 2 1 4 4 C 1.54385 * 110.23279 * 121.99732 * 2 1 3 5 5 C 1.54541 * 101.77165 * 144.73182 * 4 2 1 6 6 H 1.08999 * 110.57990 * 93.58202 * 5 4 2 7 7 N 1.46893 * 110.48061 * 216.14500 * 5 4 2 8 8 C 1.46903 * 111.00158 * 201.28320 * 7 5 4 9 9 C 1.50699 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00511 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99783 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99573 * 180.27665 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 C 1.51568 * 104.24389 * 334.84164 * 5 4 2 18 18 N 1.30907 * 141.43944 * 196.54300 * 17 5 4 19 19 C 1.34010 * 109.29853 * 179.80284 * 18 17 5 20 20 C 1.34567 * 108.03211 * 0.09642 * 19 18 17 21 21 N 1.34813 * 109.94493 * 16.53351 * 17 5 4 22 22 H 1.08999 * 109.47169 * 180.44900 * 1 2 3 23 23 H 1.09004 * 109.47071 * 300.44608 * 1 2 3 24 24 H 1.09002 * 109.47480 * 60.44634 * 1 2 3 25 25 H 1.09006 * 110.96729 * 26.61930 * 4 2 1 26 26 H 1.08991 * 110.96912 * 262.86028 * 4 2 1 27 27 H 1.00902 * 110.99870 * 77.32591 * 7 5 4 28 28 H 1.08992 * 109.47265 * 60.00170 * 8 7 5 29 29 H 1.09005 * 109.46357 * 299.99849 * 8 7 5 30 30 H 0.97004 * 119.99485 * 179.72881 * 12 11 9 31 31 H 1.07995 * 125.98576 * 180.02562 * 19 18 17 32 32 H 1.07998 * 126.58564 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0639 -0.7676 1.2285 5 6 3.3319 -1.4388 0.6542 6 1 4.2097 -0.8189 0.8367 7 7 3.5165 -2.7737 1.2388 8 6 4.9133 -3.2126 1.1187 9 6 5.0633 -4.5830 1.7274 10 1 4.2068 -5.0783 2.1606 11 6 6.2941 -5.2046 1.7313 12 7 6.4238 -6.4028 2.2576 13 14 7.7752 -4.3483 0.9815 14 1 8.4581 -3.5385 2.0222 15 1 8.7172 -5.3648 0.4481 16 1 7.3279 -3.4608 -0.1219 17 6 3.0572 -1.5444 -0.8326 18 7 3.4739 -2.1614 -1.9093 19 6 2.7392 -1.7668 -2.9583 20 6 1.8350 -0.8715 -2.5204 21 7 2.0384 -0.7289 -1.1710 22 1 -0.3633 -1.0276 0.0081 23 1 -0.3633 0.5208 0.8860 24 1 -0.3634 0.5069 -0.8940 25 1 1.3449 -1.5150 1.5641 26 1 2.3175 -0.0819 2.0369 27 1 2.8897 -3.4428 0.8175 28 1 5.5613 -2.5094 1.6418 29 1 5.1928 -3.2504 0.0658 30 1 7.2889 -6.8418 2.2568 31 1 2.8536 -2.1068 -3.9769 32 1 1.0920 -0.3628 -3.1166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306731374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:10 Heat of formation + Delta-G solvation = 50.889305 kcal Electronic energy + Delta-G solvation = -14954.147016 eV Core-core repulsion = 12529.011722 eV Total energy + Delta-G solvation = -2425.135294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.41855 -38.33347 -36.45932 -34.53333 -31.90602 -31.24775 -29.37545 -28.07455 -24.82733 -23.21449 -22.95682 -21.43771 -20.78593 -18.93878 -18.22764 -16.68557 -16.53282 -15.86012 -15.56456 -15.26217 -14.93194 -14.65994 -14.54174 -14.04721 -13.78959 -13.41072 -13.26037 -12.99118 -12.66043 -12.54596 -12.21026 -11.95360 -11.76727 -11.43992 -10.84193 -10.80891 -10.54893 -9.61295 -9.13303 -8.30650 -6.33756 1.09012 1.32046 1.36129 1.48849 1.85990 2.16283 2.34266 2.90677 3.04107 3.37900 3.51940 3.82619 3.93194 4.11446 4.25069 4.29907 4.53716 4.67424 4.73940 4.77628 4.82078 5.00935 5.01885 5.16003 5.20428 5.40064 5.50221 5.87770 5.90106 6.17173 6.39835 6.53641 6.72530 7.23184 7.30409 8.86096 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.007608 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.855531 B = 3679.692021 C = 4065.437455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.120 0.880 4 C -0.103 4.103 5 C 0.153 3.847 6 H 0.098 0.902 7 N -0.657 5.657 8 C 0.176 3.824 9 C -0.525 4.525 10 H 0.039 0.961 11 C 0.012 3.988 12 N -0.946 5.946 13 Si 0.946 3.054 14 H -0.258 1.258 15 H -0.280 1.280 16 H -0.262 1.262 17 C 0.132 3.868 18 N -0.531 5.531 19 C -0.059 4.059 20 C -0.024 4.024 21 N -0.469 5.469 22 H 0.051 0.949 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.335 0.665 28 H 0.028 0.972 29 H -0.015 1.015 30 H 0.268 0.732 31 H 0.186 0.814 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 18.509 -6.420 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 H 0.138 0.862 4 C -0.142 4.142 5 C 0.040 3.960 6 H 0.116 0.884 7 N -0.285 5.285 8 C 0.047 3.953 9 C -0.563 4.563 10 H 0.058 0.942 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.770 3.230 14 H -0.182 1.182 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.133 4.133 18 N -0.251 5.251 19 C -0.207 4.207 20 C -0.157 4.157 21 N -0.153 5.153 22 H 0.070 0.930 23 H 0.124 0.876 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.046 0.954 29 H 0.003 0.997 30 H 0.077 0.923 31 H 0.203 0.797 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.698 18.211 -5.740 22.393 hybrid contribution 0.374 -0.191 -1.439 1.499 sum -11.324 18.020 -7.179 22.461 Atomic orbital electron populations 1.22066 0.90938 1.03009 1.04848 1.22467 0.97397 0.96647 0.80977 0.86206 1.22930 0.94510 0.99839 0.96875 1.21199 1.00533 0.93300 0.80960 0.88392 1.60660 1.07029 1.02663 1.58128 1.19762 0.87138 0.94359 0.93998 1.21301 0.95759 1.01471 1.37806 0.94227 1.25786 1.02057 0.95413 0.95324 1.70041 1.25741 1.15630 1.47235 0.85724 0.78832 0.78804 0.79668 1.18230 1.20543 1.18630 1.25747 0.93045 0.95899 0.98586 1.69861 1.29582 1.26844 0.98838 1.22804 0.97419 1.01640 0.98861 1.22846 1.05276 1.05141 0.82396 1.46958 1.27534 1.32933 1.07875 0.93010 0.87598 0.90940 0.89014 0.85060 0.84748 0.95428 0.99673 0.92334 0.79724 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.45 71.98 0.68 -1.15 16 2 C 0.13 2.18 4.13 45.36 0.19 2.37 16 3 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.10 -2.15 6.38 31.59 0.20 -1.95 16 5 C 0.15 5.04 3.23 44.97 0.15 5.18 16 6 H 0.10 3.18 7.87 -2.39 -0.02 3.16 16 7 N -0.66 -27.90 6.29 -495.31 -3.11 -31.01 16 8 C 0.18 9.03 4.35 85.56 0.37 9.40 16 9 C -0.53 -32.03 9.87 25.60 0.25 -31.78 16 10 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 11 C 0.01 0.72 5.47 84.66 0.46 1.19 16 12 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 13 Si 0.95 47.08 27.47 68.60 1.88 48.96 16 14 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 16 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 17 C 0.13 4.71 7.86 138.36 1.09 5.80 16 18 N -0.53 -21.81 11.26 -187.33 -2.11 -23.92 16 19 C -0.06 -1.87 11.86 83.52 0.99 -0.88 16 20 C -0.02 -0.58 12.00 83.01 1.00 0.42 16 21 N -0.47 -12.27 3.27 -486.96 -1.59 -13.86 16 22 H 0.05 0.81 8.13 -2.39 -0.02 0.80 16 23 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 2.01 7.86 -2.38 -0.02 1.99 16 26 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.34 15.02 8.48 -89.69 -0.76 14.26 16 28 H 0.03 1.37 7.51 -2.39 -0.02 1.36 16 29 H -0.01 -0.80 7.15 -2.38 -0.02 -0.82 16 30 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 31 H 0.19 4.76 8.06 -2.91 -0.02 4.73 16 32 H 0.21 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -78.16 269.65 1.04 -77.12 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.29 Total: 14.99 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.38 Total: -11.40 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -6.52 Total: -129.68 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.88 Total: 48.96 kcal Total: -78.16 1.04 -77.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306731374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.010 kcal (2) G-P(sol) polarization free energy of solvation -78.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds