Wall clock time and date at job start Mon Mar 30 2020 03:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.27302 * 2 1 4 4 C 1.54380 * 110.23492 * 121.95165 * 2 1 3 5 5 C 1.54540 * 101.77256 * 144.72109 * 4 2 1 6 6 H 1.08999 * 110.47682 * 215.99978 * 5 4 2 7 7 N 1.46895 * 110.47571 * 93.50734 * 5 4 2 8 8 C 1.46906 * 110.99789 * 155.00077 * 7 5 4 9 9 C 1.50703 * 109.47109 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99876 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99989 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99944 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47454 * 59.99696 * 13 11 9 15 15 H 1.48506 * 109.47297 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46926 * 299.99488 * 13 11 9 17 17 C 1.51562 * 104.23721 * 334.82011 * 5 4 2 18 18 N 1.30914 * 141.44553 * 196.56009 * 17 5 4 19 19 C 1.34001 * 109.30218 * 179.83922 * 18 17 5 20 20 C 1.34560 * 108.03462 * 0.07697 * 19 18 17 21 21 N 1.34818 * 109.94900 * 16.58444 * 17 5 4 22 22 H 1.09002 * 109.47143 * 298.04985 * 1 2 3 23 23 H 1.09002 * 109.47307 * 58.05020 * 1 2 3 24 24 H 1.09000 * 109.47374 * 178.05349 * 1 2 3 25 25 H 1.09001 * 110.97106 * 26.59858 * 4 2 1 26 26 H 1.08998 * 110.96681 * 262.84253 * 4 2 1 27 27 H 1.00902 * 111.00273 * 278.95599 * 7 5 4 28 28 H 1.08992 * 109.47459 * 299.99826 * 8 7 5 29 29 H 1.09004 * 109.47040 * 59.99976 * 8 7 5 30 30 H 0.96997 * 119.99752 * 180.02562 * 12 11 9 31 31 H 1.08003 * 125.98172 * 180.09887 * 19 18 17 32 32 H 1.08004 * 126.58223 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0640 -0.7666 1.2291 5 6 3.3319 -1.4385 0.6552 6 1 3.4701 -2.4276 1.0918 7 7 4.5131 -0.6003 0.9000 8 6 5.7380 -1.4110 0.9236 9 6 6.9261 -0.5188 1.1759 10 1 6.7853 0.5441 1.3061 11 6 8.1928 -1.0594 1.2405 12 7 8.3642 -2.3538 1.0824 13 14 9.6654 0.0464 1.5539 14 1 9.5006 0.7316 2.8610 15 1 10.9036 -0.7731 1.5777 16 1 9.7625 1.0596 0.4726 17 6 3.0566 -1.5457 -0.8313 18 7 3.4726 -2.1641 -1.9076 19 6 2.7382 -1.7699 -2.9568 20 6 1.8346 -0.8738 -2.5196 21 7 2.0383 -0.7298 -1.1706 22 1 -0.3633 0.4833 0.9070 23 1 -0.3634 0.5438 -0.8720 24 1 -0.3634 -1.0271 -0.0349 25 1 1.3450 -1.5135 1.5656 26 1 2.3179 -0.0801 2.0368 27 1 4.5811 0.1377 0.2153 28 1 5.6665 -2.1544 1.7174 29 1 5.8592 -1.9143 -0.0357 30 1 9.2553 -2.7341 1.1282 31 1 2.8515 -2.1119 -3.9750 32 1 1.0918 -0.3652 -3.1164 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306731376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:13 Heat of formation + Delta-G solvation = 71.563692 kcal Electronic energy + Delta-G solvation = -14921.319679 eV Core-core repulsion = 12497.080894 eV Total energy + Delta-G solvation = -2424.238785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.17861 -37.07827 -34.67674 -32.46941 -30.42489 -29.92589 -27.82757 -26.02583 -23.79993 -21.90207 -21.36314 -20.18513 -19.58985 -16.91200 -16.26203 -15.49668 -14.68658 -14.38105 -14.22614 -13.92132 -13.67883 -13.44079 -12.73424 -12.46732 -12.30803 -11.96811 -11.77002 -11.40533 -11.34653 -10.84880 -10.69429 -10.56022 -9.90234 -9.48312 -9.29350 -9.16449 -8.49567 -8.16843 -7.44323 -5.97203 -3.99895 2.33488 2.94943 3.36966 3.40664 3.43160 3.51569 4.15374 4.46270 4.60851 4.66839 4.77216 5.01835 5.11835 5.38257 5.38968 5.43785 5.50165 5.70171 5.78353 5.86831 5.95608 6.04470 6.18457 6.61384 7.15043 7.22338 7.34316 7.54523 7.76572 8.13464 8.25818 8.52666 8.54678 9.07285 9.63913 11.13704 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039891 B = 0.006939 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.740097 B = 4034.099572 C = 4378.581199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.095 0.905 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.101 0.899 7 N -0.664 5.664 8 C 0.191 3.809 9 C -0.518 4.518 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.172 3.828 18 N -0.474 5.474 19 C -0.027 4.027 20 C -0.050 4.050 21 N -0.476 5.476 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.332 0.668 28 H 0.030 0.970 29 H 0.002 0.998 30 H 0.262 0.738 31 H 0.169 0.831 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 4.519 -2.510 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.155 4.155 5 C 0.046 3.954 6 H 0.119 0.881 7 N -0.293 5.293 8 C 0.065 3.935 9 C -0.556 4.556 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.727 3.273 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.093 4.093 18 N -0.193 5.193 19 C -0.176 4.176 20 C -0.182 4.182 21 N -0.161 5.161 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.048 0.952 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.186 0.814 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.639 3.962 -1.842 16.238 hybrid contribution 0.278 0.940 -1.126 1.493 sum -15.361 4.902 -2.969 16.395 Atomic orbital electron populations 1.22072 0.93420 1.03029 1.02938 1.22101 0.95222 0.96676 0.83367 0.88694 1.22904 0.96128 1.00199 0.96313 1.20840 0.92623 0.99069 0.82883 0.88079 1.61072 1.03229 1.13023 1.52014 1.19680 0.84519 0.92833 0.96509 1.21088 0.90940 0.94377 1.49237 0.92180 1.24967 0.98969 0.95077 0.95398 1.69963 1.22664 1.10768 1.49861 0.86554 0.81685 0.80337 0.78745 1.20198 1.21302 1.20346 1.25694 0.90810 0.94040 0.98735 1.69981 1.26782 1.25373 0.97134 1.22320 0.96260 1.00413 0.98597 1.22215 1.06342 1.06960 0.82663 1.46685 1.28610 1.33892 1.06908 0.90307 0.92221 0.91718 0.89762 0.87116 0.85158 0.95178 0.97998 0.92827 0.81416 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.45 37.16 0.35 -1.01 16 2 C 0.13 1.52 4.13 -66.93 -0.28 1.25 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.12 -1.47 6.38 -25.20 -0.16 -1.63 16 5 C 0.16 2.86 3.26 -67.63 -0.22 2.64 16 6 H 0.10 1.90 7.82 -51.93 -0.41 1.49 16 7 N -0.66 -14.16 6.30 -107.91 -0.68 -14.84 16 8 C 0.19 5.12 5.29 -4.97 -0.03 5.10 16 9 C -0.52 -14.95 9.32 -34.44 -0.32 -15.27 16 10 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 13 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.17 3.29 7.91 -154.85 -1.23 2.06 16 18 N -0.47 -10.00 11.26 -10.56 -0.12 -10.12 16 19 C -0.03 -0.45 11.86 -17.91 -0.21 -0.66 16 20 C -0.05 -0.72 12.00 -16.45 -0.20 -0.92 16 21 N -0.48 -7.32 3.27 -105.27 -0.34 -7.66 16 22 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 26 H 0.11 1.30 8.08 -51.93 -0.42 0.88 16 27 H 0.33 7.12 8.43 -39.29 -0.33 6.79 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.17 2.31 8.06 -52.48 -0.42 1.88 16 32 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 273.30 15.07 4.12 4.12 Total: -1.00 -33.44 273.30 -8.19 -41.62 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.49 Total: 3.34 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.39 Total: -6.86 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.41 Total: -59.29 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.44 -8.19 -41.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306731376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.189 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds