Wall clock time and date at job start Mon Mar 30 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.27302 * 2 1 4 4 C 1.54380 * 110.23492 * 121.95165 * 2 1 3 5 5 C 1.54540 * 101.77256 * 144.72109 * 4 2 1 6 6 H 1.08999 * 110.47682 * 215.99978 * 5 4 2 7 7 N 1.46895 * 110.47571 * 93.50734 * 5 4 2 8 8 C 1.46906 * 110.99789 * 155.00077 * 7 5 4 9 9 C 1.50703 * 109.47109 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99876 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99989 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99944 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47454 * 59.99696 * 13 11 9 15 15 H 1.48506 * 109.47297 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46926 * 299.99488 * 13 11 9 17 17 C 1.51562 * 104.23721 * 334.82011 * 5 4 2 18 18 N 1.30914 * 141.44553 * 196.56009 * 17 5 4 19 19 C 1.34001 * 109.30218 * 179.83922 * 18 17 5 20 20 C 1.34560 * 108.03462 * 0.07697 * 19 18 17 21 21 N 1.34818 * 109.94900 * 16.58444 * 17 5 4 22 22 H 1.09002 * 109.47143 * 298.04985 * 1 2 3 23 23 H 1.09002 * 109.47307 * 58.05020 * 1 2 3 24 24 H 1.09000 * 109.47374 * 178.05349 * 1 2 3 25 25 H 1.09001 * 110.97106 * 26.59858 * 4 2 1 26 26 H 1.08998 * 110.96681 * 262.84253 * 4 2 1 27 27 H 1.00902 * 111.00273 * 278.95599 * 7 5 4 28 28 H 1.08992 * 109.47459 * 299.99826 * 8 7 5 29 29 H 1.09004 * 109.47040 * 59.99976 * 8 7 5 30 30 H 0.96997 * 119.99752 * 180.02562 * 12 11 9 31 31 H 1.08003 * 125.98172 * 180.09887 * 19 18 17 32 32 H 1.08004 * 126.58223 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0640 -0.7666 1.2291 5 6 3.3319 -1.4385 0.6552 6 1 3.4701 -2.4276 1.0918 7 7 4.5131 -0.6003 0.9000 8 6 5.7380 -1.4110 0.9236 9 6 6.9261 -0.5188 1.1759 10 1 6.7853 0.5441 1.3061 11 6 8.1928 -1.0594 1.2405 12 7 8.3642 -2.3538 1.0824 13 14 9.6654 0.0464 1.5539 14 1 9.5006 0.7316 2.8610 15 1 10.9036 -0.7731 1.5777 16 1 9.7625 1.0596 0.4726 17 6 3.0566 -1.5457 -0.8313 18 7 3.4726 -2.1641 -1.9076 19 6 2.7382 -1.7699 -2.9568 20 6 1.8346 -0.8738 -2.5196 21 7 2.0383 -0.7298 -1.1706 22 1 -0.3633 0.4833 0.9070 23 1 -0.3634 0.5438 -0.8720 24 1 -0.3634 -1.0271 -0.0349 25 1 1.3450 -1.5135 1.5656 26 1 2.3179 -0.0801 2.0368 27 1 4.5811 0.1377 0.2153 28 1 5.6665 -2.1544 1.7174 29 1 5.8592 -1.9143 -0.0357 30 1 9.2553 -2.7341 1.1282 31 1 2.8515 -2.1119 -3.9750 32 1 1.0918 -0.3652 -3.1164 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306731376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:12 Heat of formation + Delta-G solvation = 47.744975 kcal Electronic energy + Delta-G solvation = -14922.352536 eV Core-core repulsion = 12497.080894 eV Total energy + Delta-G solvation = -2425.271643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.43710 -38.40104 -36.30609 -34.48942 -31.82878 -31.15691 -29.18930 -27.82324 -25.03833 -23.79272 -22.77076 -21.38831 -20.89705 -18.64082 -17.84832 -16.99016 -16.41481 -15.97810 -15.52272 -15.15645 -15.00285 -14.80384 -14.30925 -13.72790 -13.60064 -13.46274 -13.11297 -12.87811 -12.74688 -12.63399 -12.28198 -12.06497 -11.84135 -11.26986 -10.85040 -10.68368 -10.55443 -9.65914 -9.13818 -8.21607 -6.34346 1.08233 1.40311 1.44903 1.52835 1.86108 2.14891 2.40283 2.95834 3.11381 3.36246 3.60603 3.70966 3.94641 4.12372 4.30520 4.39226 4.57199 4.68095 4.72737 4.79268 4.96947 5.01096 5.13115 5.19143 5.29219 5.40777 5.57520 5.89226 5.97642 6.17499 6.26887 6.54243 6.83683 7.22643 7.35976 8.90106 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039891 B = 0.006939 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.740097 B = 4034.099572 C = 4378.581199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.124 3.876 3 H 0.105 0.895 4 C -0.101 4.101 5 C 0.151 3.849 6 H 0.078 0.922 7 N -0.652 5.652 8 C 0.211 3.789 9 C -0.539 4.539 10 H 0.067 0.933 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.977 3.023 14 H -0.262 1.262 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.134 3.866 18 N -0.534 5.534 19 C -0.059 4.059 20 C -0.023 4.023 21 N -0.466 5.466 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.331 0.669 28 H 0.004 0.996 29 H -0.043 1.043 30 H 0.265 0.735 31 H 0.188 0.812 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 6.928 -2.341 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 H 0.123 0.877 4 C -0.139 4.139 5 C 0.038 3.962 6 H 0.096 0.904 7 N -0.280 5.280 8 C 0.083 3.917 9 C -0.577 4.577 10 H 0.086 0.914 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.800 3.200 14 H -0.187 1.187 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.131 4.131 18 N -0.254 5.254 19 C -0.207 4.207 20 C -0.156 4.156 21 N -0.150 5.150 22 H 0.124 0.876 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.022 0.978 29 H -0.026 1.026 30 H 0.074 0.926 31 H 0.205 0.795 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -17.394 6.392 -1.653 18.604 hybrid contribution 0.732 0.141 -1.245 1.451 sum -16.662 6.532 -2.898 18.130 Atomic orbital electron populations 1.22045 0.90204 1.03308 1.04911 1.22418 0.97635 0.96286 0.81306 0.87704 1.22907 0.93398 1.00681 0.96956 1.21002 0.93479 0.98261 0.83493 0.90369 1.60966 1.02259 1.12623 1.52157 1.19218 0.87036 0.92458 0.92999 1.21495 0.91950 0.94907 1.49348 0.91449 1.26019 1.02503 0.96638 0.94736 1.70121 1.23598 1.12976 1.50709 0.85334 0.77182 0.78185 0.79259 1.18665 1.20808 1.19389 1.25539 0.92902 0.96049 0.98575 1.69847 1.28987 1.27472 0.99068 1.22820 0.97096 1.01937 0.98876 1.22878 1.05418 1.04972 0.82347 1.46963 1.27264 1.32817 1.07933 0.87647 0.91032 0.92178 0.87405 0.85844 0.85203 0.97761 1.02551 0.92626 0.79518 0.77127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.45 71.98 0.68 -1.22 16 2 C 0.12 2.56 4.13 45.36 0.19 2.75 16 3 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.10 -2.35 6.38 31.59 0.20 -2.15 16 5 C 0.15 5.55 3.26 44.97 0.15 5.70 16 6 H 0.08 3.16 7.82 -2.39 -0.02 3.14 16 7 N -0.65 -28.62 6.30 -495.30 -3.12 -31.74 16 8 C 0.21 11.95 5.29 85.56 0.45 12.40 16 9 C -0.54 -31.86 9.32 25.60 0.24 -31.63 16 10 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 11 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 12 N -0.93 -59.14 13.29 21.45 0.28 -58.86 16 13 Si 0.98 45.53 29.54 68.60 2.03 47.55 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 C 0.13 5.22 7.91 138.35 1.09 6.32 16 18 N -0.53 -23.43 11.26 -187.33 -2.11 -25.54 16 19 C -0.06 -1.99 11.86 83.52 0.99 -1.00 16 20 C -0.02 -0.61 12.00 83.01 1.00 0.39 16 21 N -0.47 -13.49 3.27 -486.97 -1.59 -15.08 16 22 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.11 2.02 7.91 -2.39 -0.02 2.00 16 26 H 0.12 2.58 8.08 -2.39 -0.02 2.57 16 27 H 0.33 14.52 8.43 -89.69 -0.76 13.76 16 28 H 0.00 0.26 8.07 -2.39 -0.02 0.24 16 29 H -0.04 -2.81 8.14 -2.38 -0.02 -2.83 16 30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.19 5.09 8.06 -2.91 -0.02 5.07 16 32 H 0.21 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -76.74 273.30 1.29 -75.45 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.35 Total: 16.24 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.45 Total: -8.01 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.54 Total: -131.23 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.74 1.29 -75.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306731376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.195 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds