Wall clock time and date at job start Mon Mar 30 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47149 * 2 1 4 4 C 1.50698 * 109.47385 * 239.99929 * 2 1 3 5 5 H 1.07998 * 119.99853 * 245.50843 * 4 2 1 6 6 C 1.37877 * 120.00405 * 65.50607 * 4 2 1 7 7 N 1.31514 * 119.99665 * 8.94027 * 6 4 2 8 8 Si 1.86797 * 120.00507 * 188.94439 * 6 4 2 9 9 H 1.48500 * 109.47117 * 84.99191 * 8 6 4 10 10 H 1.48499 * 109.47459 * 204.99395 * 8 6 4 11 11 H 1.48502 * 109.46758 * 324.99619 * 8 6 4 12 12 N 1.46896 * 109.47239 * 119.99569 * 2 1 3 13 13 C 1.46903 * 111.00025 * 176.04707 * 12 2 1 14 14 C 1.40061 * 110.99915 * 300.00236 * 12 2 1 15 15 C 1.38482 * 120.52277 * 300.01690 * 14 12 2 16 16 N 1.32016 * 120.73983 * 179.97438 * 15 14 12 17 17 C 1.31934 * 121.94829 * 0.02562 * 16 15 14 18 18 C 1.38055 * 120.97361 * 359.97438 * 17 16 15 19 19 C 1.39220 * 119.14741 * 359.97438 * 18 17 16 20 20 N 1.39498 * 120.88214 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46778 * 184.33624 * 1 2 3 22 22 H 1.08994 * 109.47322 * 304.34163 * 1 2 3 23 23 H 1.08999 * 109.47004 * 64.34329 * 1 2 3 24 24 H 0.97001 * 119.99975 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.46824 * 183.95315 * 13 12 2 26 26 H 1.08994 * 109.47310 * 303.95090 * 13 12 2 27 27 H 1.09006 * 109.46933 * 63.95733 * 13 12 2 28 28 H 1.08002 * 119.63314 * 0.02562 * 15 14 12 29 29 H 1.08004 * 119.51305 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.42665 * 180.02562 * 18 17 16 31 31 H 0.96993 * 120.00197 * 359.97438 * 20 19 18 32 32 H 0.97003 * 119.99712 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1338 6 6 1.7955 -0.1770 -2.4796 7 7 1.2897 1.0317 -2.5932 8 14 2.1930 -1.1709 -4.0104 9 1 1.0505 -2.0636 -4.3314 10 1 2.4365 -0.2497 -5.1494 11 1 3.4078 -1.9896 -3.7674 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5706 -0.0572 2.3642 15 6 1.9018 1.2633 2.6175 16 7 1.4804 1.8664 3.7137 17 6 0.7339 1.2472 4.6081 18 6 0.3590 -0.0697 4.4316 19 6 0.7787 -0.7470 3.2900 20 7 0.4215 -2.0783 3.0754 21 1 -0.3633 -1.0248 0.0777 22 1 -0.3633 0.5797 0.8485 23 1 -0.3633 0.4450 -0.9263 24 1 1.1227 1.4068 -3.4720 25 1 3.8164 -1.3719 2.0501 26 1 3.8070 -1.2914 0.2720 27 1 3.9192 0.2046 1.2300 28 1 2.5111 1.8062 1.9101 29 1 0.4112 1.7784 5.4914 30 1 -0.2527 -0.5678 5.1693 31 1 -0.1260 -2.5445 3.7262 32 1 0.7214 -2.5380 2.2755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307336629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:54 Heat of formation + Delta-G solvation = 42.335500 kcal Electronic energy + Delta-G solvation = -15299.740275 eV Core-core repulsion = 12874.234060 eV Total energy + Delta-G solvation = -2425.506215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93129 -36.63316 -34.73218 -32.82156 -29.95958 -29.40894 -28.66484 -25.38546 -24.28910 -22.74998 -21.84384 -19.71514 -17.20385 -17.03111 -16.11112 -15.40686 -14.82888 -14.50872 -13.97406 -13.73005 -13.56772 -13.07399 -12.85817 -12.26685 -11.91011 -11.45285 -11.10463 -11.04721 -10.86436 -10.68922 -10.27384 -10.20863 -10.09248 -9.26393 -8.98395 -8.50837 -8.41210 -7.40119 -7.32388 -6.07849 -4.10008 1.65721 2.07167 3.28401 3.35199 3.36915 4.20237 4.35063 4.40729 4.75988 5.11128 5.25455 5.29497 5.64344 5.85297 6.09438 6.21009 6.25063 6.29818 6.50207 6.72757 6.76734 6.94011 7.01996 7.17307 7.40544 7.59436 7.72778 7.83059 8.02854 8.14300 8.20448 8.55268 8.66354 8.95844 9.53991 11.01048 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043528 B = 0.008244 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.114914 B = 3395.757814 C = 3532.517458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.511 4.511 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.501 5.501 13 C 0.043 3.957 14 C -0.006 4.006 15 C 0.103 3.897 16 N -0.525 5.525 17 C 0.118 3.882 18 C -0.259 4.259 19 C 0.264 3.736 20 N -0.855 5.855 21 H 0.033 0.967 22 H 0.009 0.991 23 H 0.068 0.932 24 H 0.262 0.738 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.018 0.982 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.391 0.609 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 -4.132 10.423 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 H 0.029 0.971 4 C -0.549 4.549 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.224 5.224 13 C -0.104 4.104 14 C -0.107 4.107 15 C -0.054 4.054 16 N -0.238 5.238 17 C -0.040 4.040 18 C -0.286 4.286 19 C 0.148 3.852 20 N -0.394 5.394 21 H 0.052 0.948 22 H 0.028 0.972 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.036 0.964 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.142 0.858 31 H 0.219 0.781 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.927 -3.584 10.359 11.000 hybrid contribution 0.012 -0.901 -1.126 1.443 sum -0.915 -4.485 9.232 10.305 Atomic orbital electron populations 1.21664 0.97996 0.98671 0.99597 1.19357 0.91916 0.92677 0.84895 0.97058 1.21059 1.35920 1.08161 0.89786 0.91773 1.24934 0.95354 0.94665 0.99030 1.69971 1.44585 1.14171 1.23901 0.86575 0.78712 0.79947 0.82525 1.20605 1.21395 1.19959 1.59766 1.09910 1.52120 1.00573 1.22239 0.87116 0.99401 1.01632 1.19514 1.02867 0.93140 0.95196 1.23081 0.96410 0.92217 0.93706 1.67605 1.13921 1.38644 1.03609 1.22289 0.93428 0.91173 0.97101 1.21419 1.10016 0.97482 0.99637 1.17950 0.90304 0.85260 0.91694 1.42355 1.59104 1.10056 1.27851 0.94809 0.97239 0.91311 0.92849 0.93938 0.89856 0.96371 0.83562 0.83777 0.85846 0.78126 0.75670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.86 37.16 0.33 -2.61 16 2 C 0.22 5.31 1.71 -68.87 -0.12 5.20 16 3 H 0.01 0.32 7.10 -51.93 -0.37 -0.05 16 4 C -0.51 -13.47 7.66 -34.44 -0.26 -13.74 16 5 H 0.06 1.67 6.66 -52.49 -0.35 1.32 16 6 C 0.06 1.69 5.17 -17.82 -0.09 1.60 16 7 N -0.89 -25.16 12.14 55.43 0.67 -24.49 16 8 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.50 -10.41 3.90 -172.34 -0.67 -11.09 16 13 C 0.04 0.84 9.11 60.07 0.55 1.38 16 14 C -0.01 -0.12 3.43 -83.35 -0.29 -0.40 16 15 C 0.10 2.03 9.77 -17.38 -0.17 1.86 16 16 N -0.53 -9.81 10.36 -13.17 -0.14 -9.94 16 17 C 0.12 1.83 11.17 -17.58 -0.20 1.64 16 18 C -0.26 -3.82 9.99 -39.28 -0.39 -4.22 16 19 C 0.26 4.41 6.83 -83.34 -0.57 3.84 16 20 N -0.86 -11.91 9.08 32.65 0.30 -11.61 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.01 0.20 7.37 -51.93 -0.38 -0.18 16 23 H 0.07 1.82 6.80 -51.93 -0.35 1.47 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.68 6.20 -51.93 -0.32 1.36 16 27 H 0.02 0.35 7.38 -51.93 -0.38 -0.04 16 28 H 0.15 2.99 7.04 -52.49 -0.37 2.62 16 29 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.39 4.13 8.86 -40.82 -0.36 3.77 16 32 H 0.41 6.18 8.22 -40.82 -0.34 5.85 16 LS Contribution 266.41 15.07 4.01 4.01 Total: -1.00 -29.07 266.41 -6.11 -35.18 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.05 Total: 7.53 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.21 Total: -5.44 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.16 Total: -57.13 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.07 -6.11 -35.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.520 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds