Wall clock time and date at job start Mon Mar 30 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47149 * 2 1 4 4 C 1.50698 * 109.47385 * 239.99929 * 2 1 3 5 5 H 1.07998 * 119.99853 * 245.50843 * 4 2 1 6 6 C 1.37877 * 120.00405 * 65.50607 * 4 2 1 7 7 N 1.31514 * 119.99665 * 8.94027 * 6 4 2 8 8 Si 1.86797 * 120.00507 * 188.94439 * 6 4 2 9 9 H 1.48500 * 109.47117 * 84.99191 * 8 6 4 10 10 H 1.48499 * 109.47459 * 204.99395 * 8 6 4 11 11 H 1.48502 * 109.46758 * 324.99619 * 8 6 4 12 12 N 1.46896 * 109.47239 * 119.99569 * 2 1 3 13 13 C 1.46903 * 111.00025 * 176.04707 * 12 2 1 14 14 C 1.40061 * 110.99915 * 300.00236 * 12 2 1 15 15 C 1.38482 * 120.52277 * 300.01690 * 14 12 2 16 16 N 1.32016 * 120.73983 * 179.97438 * 15 14 12 17 17 C 1.31934 * 121.94829 * 0.02562 * 16 15 14 18 18 C 1.38055 * 120.97361 * 359.97438 * 17 16 15 19 19 C 1.39220 * 119.14741 * 359.97438 * 18 17 16 20 20 N 1.39498 * 120.88214 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46778 * 184.33624 * 1 2 3 22 22 H 1.08994 * 109.47322 * 304.34163 * 1 2 3 23 23 H 1.08999 * 109.47004 * 64.34329 * 1 2 3 24 24 H 0.97001 * 119.99975 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.46824 * 183.95315 * 13 12 2 26 26 H 1.08994 * 109.47310 * 303.95090 * 13 12 2 27 27 H 1.09006 * 109.46933 * 63.95733 * 13 12 2 28 28 H 1.08002 * 119.63314 * 0.02562 * 15 14 12 29 29 H 1.08004 * 119.51305 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.42665 * 180.02562 * 18 17 16 31 31 H 0.96993 * 120.00197 * 359.97438 * 20 19 18 32 32 H 0.97003 * 119.99712 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1338 6 6 1.7955 -0.1770 -2.4796 7 7 1.2897 1.0317 -2.5932 8 14 2.1930 -1.1709 -4.0104 9 1 1.0505 -2.0636 -4.3314 10 1 2.4365 -0.2497 -5.1494 11 1 3.4078 -1.9896 -3.7674 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5706 -0.0572 2.3642 15 6 1.9018 1.2633 2.6175 16 7 1.4804 1.8664 3.7137 17 6 0.7339 1.2472 4.6081 18 6 0.3590 -0.0697 4.4316 19 6 0.7787 -0.7470 3.2900 20 7 0.4215 -2.0783 3.0754 21 1 -0.3633 -1.0248 0.0777 22 1 -0.3633 0.5797 0.8485 23 1 -0.3633 0.4450 -0.9263 24 1 1.1227 1.4068 -3.4720 25 1 3.8164 -1.3719 2.0501 26 1 3.8070 -1.2914 0.2720 27 1 3.9192 0.2046 1.2300 28 1 2.5111 1.8062 1.9101 29 1 0.4112 1.7784 5.4914 30 1 -0.2527 -0.5678 5.1693 31 1 -0.1260 -2.5445 3.7262 32 1 0.7214 -2.5380 2.2755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307336629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:54 Heat of formation + Delta-G solvation = 21.666387 kcal Electronic energy + Delta-G solvation = -15300.636555 eV Core-core repulsion = 12874.234060 eV Total energy + Delta-G solvation = -2426.402495 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32724 -38.26137 -36.01225 -34.76642 -31.57308 -30.98695 -30.10883 -27.29571 -25.97691 -24.24629 -23.29580 -21.43837 -18.71487 -18.30648 -17.89754 -17.13092 -16.49772 -15.83514 -15.68563 -15.04654 -14.96508 -14.67455 -14.47715 -14.02468 -13.65020 -13.09249 -12.93909 -12.63688 -12.52282 -12.32082 -12.15538 -12.08724 -11.92691 -10.98231 -10.71938 -10.48517 -9.77631 -9.01522 -8.67648 -8.14062 -6.23042 0.31476 0.74598 1.43727 1.44973 1.54015 2.42523 3.01267 3.05910 3.16804 3.23873 3.74953 4.06217 4.38967 4.43079 4.67664 4.71162 4.79288 4.83104 4.96481 5.01798 5.04993 5.13953 5.22644 5.44925 5.65111 5.71851 5.87182 6.15063 6.24877 6.49167 6.86766 6.91226 7.09820 7.28218 7.45262 8.94587 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043528 B = 0.008244 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.114914 B = 3395.757814 C = 3532.517458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.224 3.776 3 H -0.030 1.030 4 C -0.519 4.519 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.265 1.265 12 N -0.490 5.490 13 C 0.046 3.954 14 C -0.035 4.035 15 C 0.087 3.913 16 N -0.550 5.550 17 C 0.117 3.883 18 C -0.247 4.247 19 C 0.262 3.738 20 N -0.841 5.841 21 H 0.042 0.958 22 H 0.011 0.989 23 H 0.040 0.960 24 H 0.261 0.739 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.121 0.879 29 H 0.184 0.816 30 H 0.167 0.833 31 H 0.411 0.589 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -5.871 11.983 13.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 H -0.013 1.013 4 C -0.557 4.557 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.190 1.190 12 N -0.213 5.213 13 C -0.101 4.101 14 C -0.137 4.137 15 C -0.069 4.069 16 N -0.263 5.263 17 C -0.040 4.040 18 C -0.273 4.273 19 C 0.144 3.856 20 N -0.380 5.380 21 H 0.061 0.939 22 H 0.030 0.970 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.026 0.974 28 H 0.139 0.861 29 H 0.201 0.799 30 H 0.184 0.816 31 H 0.241 0.759 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.653 -5.361 11.954 13.205 hybrid contribution 0.211 -0.347 -1.468 1.523 sum -1.443 -5.708 10.486 12.026 Atomic orbital electron populations 1.21422 0.97725 0.98767 0.98152 1.19086 0.91997 0.90664 0.86455 1.01267 1.21356 1.35607 1.08128 0.90634 0.91502 1.25735 0.95363 0.95470 1.02077 1.70110 1.45906 1.15731 1.24419 0.85549 0.78828 0.78450 0.78677 1.20023 1.21514 1.18964 1.59689 1.10431 1.51175 0.99957 1.22224 0.86613 0.99081 1.02145 1.19569 1.05077 0.93516 0.95531 1.22809 0.97261 0.92591 0.94287 1.67592 1.15353 1.39470 1.03932 1.22990 0.91826 0.91927 0.97214 1.21818 1.09114 0.97033 0.99304 1.18092 0.89545 0.86250 0.91676 1.42322 1.58623 1.09016 1.28059 0.93918 0.96964 0.94071 0.92990 0.91342 0.90974 0.97402 0.86112 0.79946 0.81599 0.75863 0.76129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.04 8.86 71.98 0.64 -4.40 16 2 C 0.22 11.31 1.71 44.17 0.08 11.38 16 3 H -0.03 -1.76 7.10 -2.38 -0.02 -1.78 16 4 C -0.52 -27.73 7.66 25.60 0.20 -27.53 16 5 H 0.07 3.47 6.66 -2.91 -0.02 3.45 16 6 C 0.01 0.69 5.17 84.65 0.44 1.13 16 7 N -0.92 -53.69 12.14 21.45 0.26 -53.43 16 8 Si 0.96 42.99 29.55 68.60 2.03 45.02 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 N -0.49 -20.47 3.90 -699.15 -2.73 -23.20 16 13 C 0.05 1.81 9.11 127.69 1.16 2.98 16 14 C -0.04 -1.36 3.43 38.31 0.13 -1.23 16 15 C 0.09 3.52 9.77 84.72 0.83 4.35 16 16 N -0.55 -20.21 10.36 -195.59 -2.03 -22.24 16 17 C 0.12 3.30 11.17 84.63 0.95 4.25 16 18 C -0.25 -6.31 9.99 22.46 0.22 -6.09 16 19 C 0.26 8.10 6.83 38.59 0.26 8.36 16 20 N -0.84 -20.83 9.08 -50.62 -0.46 -21.29 16 21 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.01 0.55 7.37 -2.39 -0.02 0.53 16 23 H 0.04 2.22 6.80 -2.39 -0.02 2.21 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.07 2.94 6.20 -2.39 -0.01 2.92 16 27 H 0.01 0.30 7.38 -2.38 -0.02 0.28 16 28 H 0.12 5.34 7.04 -2.91 -0.02 5.32 16 29 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.41 6.99 8.86 -92.71 -0.82 6.17 16 32 H 0.41 11.22 8.22 -92.71 -0.76 10.46 16 Total: -1.00 -63.75 266.41 1.53 -62.21 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.44 Total: 19.73 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.90 Total: -6.81 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -4.95 Total: -120.15 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.75 1.53 -62.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.881 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds