Wall clock time and date at job start Mon Mar 30 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47083 * 2 1 4 4 C 1.50702 * 109.46900 * 120.00160 * 2 1 3 5 5 H 1.07999 * 119.99927 * 120.00373 * 4 2 1 6 6 C 1.37878 * 120.00090 * 299.99443 * 4 2 1 7 7 N 1.31515 * 119.99952 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47202 * 90.00363 * 8 6 4 10 10 H 1.48503 * 109.47070 * 210.00216 * 8 6 4 11 11 H 1.48496 * 109.47321 * 330.00035 * 8 6 4 12 12 N 1.46894 * 109.46923 * 240.00027 * 2 1 3 13 13 C 1.46901 * 111.00064 * 61.17287 * 12 2 1 14 14 C 1.40065 * 111.00048 * 185.12788 * 12 2 1 15 15 C 1.38487 * 120.52169 * 303.17042 * 14 12 2 16 16 N 1.32013 * 120.74052 * 180.02562 * 15 14 12 17 17 C 1.31933 * 121.94559 * 359.97438 * 16 15 14 18 18 C 1.38050 * 120.97751 * 359.97438 * 17 16 15 19 19 C 1.39226 * 119.14554 * 0.02930 * 18 17 16 20 20 N 1.39506 * 120.88228 * 180.02562 * 19 18 17 21 21 H 1.09008 * 109.47002 * 297.44050 * 1 2 3 22 22 H 1.09002 * 109.47314 * 57.43812 * 1 2 3 23 23 H 1.08997 * 109.47380 * 177.44282 * 1 2 3 24 24 H 0.97001 * 120.00368 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47133 * 183.95253 * 13 12 2 26 26 H 1.08998 * 109.47272 * 303.94969 * 13 12 2 27 27 H 1.08998 * 109.46974 * 63.95564 * 13 12 2 28 28 H 1.07997 * 119.62839 * 0.02562 * 15 14 12 29 29 H 1.08008 * 119.50939 * 179.72208 * 17 16 15 30 30 H 1.08001 * 120.42634 * 179.97438 * 18 17 16 31 31 H 0.97000 * 119.99914 * 179.97438 * 20 19 18 32 32 H 0.97000 * 120.00000 * 359.96830 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 1.5717 -0.0103 -2.4209 14 6 3.4149 -0.8133 -1.1749 15 6 4.2162 0.3103 -1.0589 16 7 5.5316 0.2014 -1.0358 17 6 6.1370 -0.9677 -1.1207 18 6 5.4117 -2.1365 -1.2376 19 6 4.0212 -2.0718 -1.2663 20 7 3.2527 -3.2302 -1.3829 21 1 -0.3633 0.4736 0.9121 22 1 -0.3634 0.5531 -0.8661 23 1 -0.3634 -1.0266 -0.0458 24 1 0.7089 1.1614 3.4844 25 1 1.8884 -0.5820 -3.2932 26 1 0.4847 0.0701 -2.4143 27 1 2.0096 0.9870 -2.4615 28 1 3.7598 1.2864 -0.9864 29 1 7.2160 -1.0107 -1.1024 30 1 5.9164 -3.0888 -1.3069 31 1 2.2847 -3.1702 -1.4013 32 1 3.6863 -4.0956 -1.4458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307336634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:58 Heat of formation + Delta-G solvation = 45.037798 kcal Electronic energy + Delta-G solvation = -15461.669471 eV Core-core repulsion = 13036.280437 eV Total energy + Delta-G solvation = -2425.389035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77332 -36.63474 -34.58447 -32.83349 -30.03266 -29.27476 -28.21723 -25.69272 -24.31370 -22.66143 -21.58391 -19.55418 -16.96139 -16.92923 -16.42789 -15.39878 -14.65319 -14.33343 -13.94103 -13.61096 -13.44844 -13.11269 -12.90584 -12.28103 -11.91738 -11.46242 -11.01545 -10.89940 -10.71375 -10.65887 -10.37082 -10.28763 -9.93941 -9.23259 -8.86625 -8.45424 -8.25083 -7.37383 -7.19734 -6.02494 -4.06099 1.85175 2.25633 3.30740 3.36935 3.40356 4.33860 4.40567 4.57613 4.80158 5.24938 5.30612 5.44220 5.78539 5.88254 6.03158 6.13876 6.29041 6.37590 6.46233 6.60178 6.78992 6.97686 7.01016 7.27301 7.41038 7.66032 7.80428 7.87747 8.23549 8.26629 8.30706 8.53068 8.79170 8.99540 9.58765 11.04224 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.012204 C = 0.010157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.875757 B = 2293.857560 C = 2756.055760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.497 4.497 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.501 5.501 13 C 0.029 3.971 14 C 0.019 3.981 15 C 0.111 3.889 16 N -0.525 5.525 17 C 0.116 3.884 18 C -0.260 4.260 19 C 0.264 3.736 20 N -0.856 5.856 21 H 0.089 0.911 22 H 0.010 0.990 23 H 0.033 0.967 24 H 0.260 0.740 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.019 0.981 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.121 0.879 31 H 0.410 0.590 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -5.322 -8.037 10.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.111 3.889 3 H 0.022 0.978 4 C -0.536 4.536 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.224 5.224 13 C -0.118 4.118 14 C -0.082 4.082 15 C -0.046 4.046 16 N -0.238 5.238 17 C -0.042 4.042 18 C -0.286 4.286 19 C 0.148 3.852 20 N -0.394 5.394 21 H 0.107 0.893 22 H 0.029 0.971 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.139 0.861 31 H 0.241 0.759 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.892 -4.874 -7.809 9.994 hybrid contribution -0.103 -0.759 0.962 1.230 sum 3.789 -5.633 -6.846 9.642 Atomic orbital electron populations 1.21859 0.97410 0.99308 1.00613 1.19379 0.92303 0.92076 0.85144 0.97828 1.21041 1.30610 1.12312 0.89635 0.92240 1.24871 0.95159 0.95077 0.98918 1.69868 1.36906 1.22991 1.23436 0.86557 0.78572 0.80019 0.82654 1.20744 1.21247 1.20035 1.59746 1.05655 1.53244 1.03782 1.22381 1.01008 0.96088 0.92367 1.19115 0.90846 0.91656 1.06624 1.22873 0.89175 0.98608 0.93938 1.67562 1.11329 1.27636 1.17267 1.22217 0.99387 0.87511 0.95088 1.21372 0.92256 1.00081 1.14933 1.17891 0.90132 0.86965 0.90178 1.42290 1.09726 1.04870 1.82535 0.89296 0.97127 0.94753 0.92965 0.93102 0.91127 0.96237 0.84011 0.83995 0.86060 0.75905 0.78280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.73 37.16 0.32 -2.82 16 2 C 0.22 5.28 1.71 -68.86 -0.12 5.16 16 3 H 0.00 0.11 7.19 -51.93 -0.37 -0.26 16 4 C -0.50 -13.51 8.03 -34.44 -0.28 -13.78 16 5 H 0.06 1.66 7.03 -52.49 -0.37 1.30 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.33 11.30 55.43 0.63 -24.70 16 8 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.50 -10.39 3.90 -172.34 -0.67 -11.06 16 13 C 0.03 0.51 9.16 60.06 0.55 1.06 16 14 C 0.02 0.38 3.40 -83.34 -0.28 0.10 16 15 C 0.11 2.34 9.84 -17.38 -0.17 2.17 16 16 N -0.53 -10.60 10.36 -13.18 -0.14 -10.74 16 17 C 0.12 1.99 11.17 -17.58 -0.20 1.80 16 18 C -0.26 -4.28 9.99 -39.28 -0.39 -4.67 16 19 C 0.26 4.81 6.63 -83.34 -0.55 4.26 16 20 N -0.86 -13.06 9.08 32.65 0.30 -12.76 16 21 H 0.09 2.32 6.01 -51.92 -0.31 2.01 16 22 H 0.01 0.21 6.48 -51.93 -0.34 -0.13 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.20 6.19 -51.93 -0.32 0.87 16 27 H 0.02 0.34 7.56 -51.93 -0.39 -0.05 16 28 H 0.14 3.03 7.09 -52.49 -0.37 2.66 16 29 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.41 6.53 8.22 -40.82 -0.34 6.20 16 32 H 0.39 4.65 8.86 -40.82 -0.36 4.29 16 LS Contribution 264.80 15.07 3.99 3.99 Total: -1.00 -29.70 264.80 -6.13 -35.83 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.00 Total: 7.78 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.21 Total: -5.13 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.11 Total: -59.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.70 -6.13 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.868 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds