Wall clock time and date at job start Mon Mar 30 2020 03:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47083 * 2 1 4 4 C 1.50702 * 109.46900 * 120.00160 * 2 1 3 5 5 H 1.07999 * 119.99927 * 120.00373 * 4 2 1 6 6 C 1.37878 * 120.00090 * 299.99443 * 4 2 1 7 7 N 1.31515 * 119.99952 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47202 * 90.00363 * 8 6 4 10 10 H 1.48503 * 109.47070 * 210.00216 * 8 6 4 11 11 H 1.48496 * 109.47321 * 330.00035 * 8 6 4 12 12 N 1.46894 * 109.46923 * 240.00027 * 2 1 3 13 13 C 1.46901 * 111.00064 * 61.17287 * 12 2 1 14 14 C 1.40065 * 111.00048 * 185.12788 * 12 2 1 15 15 C 1.38487 * 120.52169 * 303.17042 * 14 12 2 16 16 N 1.32013 * 120.74052 * 180.02562 * 15 14 12 17 17 C 1.31933 * 121.94559 * 359.97438 * 16 15 14 18 18 C 1.38050 * 120.97751 * 359.97438 * 17 16 15 19 19 C 1.39226 * 119.14554 * 0.02930 * 18 17 16 20 20 N 1.39506 * 120.88228 * 180.02562 * 19 18 17 21 21 H 1.09008 * 109.47002 * 297.44050 * 1 2 3 22 22 H 1.09002 * 109.47314 * 57.43812 * 1 2 3 23 23 H 1.08997 * 109.47380 * 177.44282 * 1 2 3 24 24 H 0.97001 * 120.00368 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47133 * 183.95253 * 13 12 2 26 26 H 1.08998 * 109.47272 * 303.94969 * 13 12 2 27 27 H 1.08998 * 109.46974 * 63.95564 * 13 12 2 28 28 H 1.07997 * 119.62839 * 0.02562 * 15 14 12 29 29 H 1.08008 * 119.50939 * 179.72208 * 17 16 15 30 30 H 1.08001 * 120.42634 * 179.97438 * 18 17 16 31 31 H 0.97000 * 119.99914 * 179.97438 * 20 19 18 32 32 H 0.97000 * 120.00000 * 359.96830 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 1.5717 -0.0103 -2.4209 14 6 3.4149 -0.8133 -1.1749 15 6 4.2162 0.3103 -1.0589 16 7 5.5316 0.2014 -1.0358 17 6 6.1370 -0.9677 -1.1207 18 6 5.4117 -2.1365 -1.2376 19 6 4.0212 -2.0718 -1.2663 20 7 3.2527 -3.2302 -1.3829 21 1 -0.3633 0.4736 0.9121 22 1 -0.3634 0.5531 -0.8661 23 1 -0.3634 -1.0266 -0.0458 24 1 0.7089 1.1614 3.4844 25 1 1.8884 -0.5820 -3.2932 26 1 0.4847 0.0701 -2.4143 27 1 2.0096 0.9870 -2.4615 28 1 3.7598 1.2864 -0.9864 29 1 7.2160 -1.0107 -1.1024 30 1 5.9164 -3.0888 -1.3069 31 1 2.2847 -3.1702 -1.4013 32 1 3.6863 -4.0956 -1.4458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307336634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:57 Heat of formation + Delta-G solvation = 23.928109 kcal Electronic energy + Delta-G solvation = -15462.584856 eV Core-core repulsion = 13036.280437 eV Total energy + Delta-G solvation = -2426.304419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24317 -38.26878 -35.95747 -34.80805 -31.68414 -30.77857 -29.80297 -27.49333 -26.08306 -24.19003 -23.07256 -21.32026 -18.59827 -18.34167 -18.07720 -17.23836 -16.34564 -15.78655 -15.66684 -14.97692 -14.91981 -14.85778 -14.42640 -13.83519 -13.74866 -13.03348 -12.88443 -12.63026 -12.45956 -12.35633 -12.17353 -12.13903 -11.78764 -10.99761 -10.63344 -10.47425 -9.68914 -9.01544 -8.59017 -8.11720 -6.20969 0.41422 0.82390 1.36724 1.38535 1.47212 2.39706 3.04506 3.10787 3.19734 3.28676 3.81202 4.11474 4.43416 4.46579 4.62418 4.73960 4.82810 4.87272 4.96569 5.08384 5.10248 5.12466 5.25649 5.50225 5.70862 5.79698 5.87976 6.27354 6.37977 6.57879 6.76584 6.95113 7.13612 7.34892 7.46674 8.93884 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.012204 C = 0.010157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.875757 B = 2293.857560 C = 2756.055760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.222 3.778 3 H -0.033 1.033 4 C -0.502 4.502 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.949 3.051 9 H -0.285 1.285 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.494 5.494 13 C 0.029 3.971 14 C -0.008 4.008 15 C 0.091 3.909 16 N -0.551 5.551 17 C 0.112 3.888 18 C -0.252 4.252 19 C 0.257 3.743 20 N -0.843 5.843 21 H 0.061 0.939 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.013 0.987 28 H 0.121 0.879 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.408 0.592 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -7.381 -8.546 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.116 3.884 3 H -0.016 1.016 4 C -0.540 4.540 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.216 5.216 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.066 4.066 16 N -0.264 5.264 17 C -0.045 4.045 18 C -0.278 4.278 19 C 0.140 3.860 20 N -0.381 5.381 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.138 0.862 29 H 0.197 0.803 30 H 0.180 0.820 31 H 0.238 0.762 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.857 -6.972 -8.338 11.904 hybrid contribution -0.329 -0.151 1.049 1.110 sum 4.528 -7.123 -7.289 11.152 Atomic orbital electron populations 1.21676 0.96699 0.99473 1.00279 1.19128 0.92740 0.90158 0.86347 1.01555 1.21223 1.30116 1.11874 0.90803 0.93178 1.25572 0.95583 0.95837 1.01517 1.69989 1.37870 1.24079 1.23850 0.85689 0.77806 0.79177 0.79766 1.21140 1.20598 1.19380 1.59691 1.06211 1.52481 1.03267 1.22448 1.01376 0.96020 0.91901 1.19251 0.90481 0.92659 1.08500 1.22690 0.90046 0.98176 0.95644 1.67541 1.10816 1.29577 1.18497 1.22896 1.01229 0.86869 0.93518 1.21772 0.91446 1.01594 1.12995 1.18087 0.91242 0.86866 0.89830 1.42251 1.09542 1.04972 1.81384 0.92044 0.94777 0.94397 0.93041 0.90885 0.90364 0.96819 0.86164 0.80289 0.82030 0.76187 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.73 71.98 0.63 -5.18 16 2 C 0.22 11.05 1.71 44.17 0.08 11.13 16 3 H -0.03 -1.87 7.19 -2.39 -0.02 -1.88 16 4 C -0.50 -27.42 8.03 25.60 0.21 -27.21 16 5 H 0.05 2.79 7.03 -2.91 -0.02 2.77 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.98 11.30 21.45 0.24 -52.74 16 8 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 N -0.49 -20.33 3.90 -699.16 -2.73 -23.06 16 13 C 0.03 1.02 9.16 127.69 1.17 2.19 16 14 C -0.01 -0.31 3.40 38.31 0.13 -0.18 16 15 C 0.09 3.90 9.84 84.73 0.83 4.73 16 16 N -0.55 -21.99 10.36 -195.60 -2.03 -24.01 16 17 C 0.11 3.57 11.17 84.63 0.95 4.51 16 18 C -0.25 -7.43 9.99 22.46 0.22 -7.21 16 19 C 0.26 8.81 6.63 38.58 0.26 9.06 16 20 N -0.84 -23.37 9.08 -50.61 -0.46 -23.83 16 21 H 0.06 3.25 6.01 -2.38 -0.01 3.24 16 22 H 0.03 1.40 6.48 -2.39 -0.02 1.38 16 23 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.08 2.55 6.19 -2.39 -0.01 2.54 16 27 H 0.01 0.48 7.56 -2.39 -0.02 0.46 16 28 H 0.12 5.49 7.09 -2.91 -0.02 5.47 16 29 H 0.18 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 31 H 0.41 12.06 8.22 -92.71 -0.76 11.29 16 32 H 0.41 8.26 8.86 -92.71 -0.82 7.44 16 Total: -1.00 -64.16 264.80 1.53 -62.63 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.44 Total: 21.21 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.92 Total: -6.96 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -4.97 Total: -123.64 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.16 1.53 -62.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.561 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds