Wall clock time and date at job start Mon Mar 30 2020 03:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.01828 * 2 1 4 4 C 1.54266 * 110.03580 * 238.54814 * 2 1 3 5 5 C 1.54886 * 104.19522 * 217.10840 * 4 2 1 6 6 C 1.54891 * 102.75064 * 37.94309 * 5 4 2 7 7 C 1.53877 * 110.02631 * 121.38168 * 2 1 3 8 8 H 1.09001 * 110.03458 * 238.61562 * 7 2 1 9 9 C 1.50698 * 110.03417 * 0.02562 * 7 2 1 10 10 N 1.31312 * 126.07758 * 264.68949 * 9 7 2 11 11 N 1.28568 * 110.20512 * 179.81973 * 10 9 7 12 12 C 1.33026 * 109.35413 * 0.44792 * 11 10 9 13 13 C 1.40127 * 126.65415 * 179.69551 * 12 11 10 14 14 H 1.08004 * 120.00163 * 174.36264 * 13 12 11 15 15 C 1.40238 * 120.00178 * 354.35836 * 13 12 11 16 16 N 1.30681 * 119.99848 * 6.02814 * 15 13 12 17 17 Si 1.86806 * 120.00021 * 186.02341 * 15 13 12 18 18 H 1.48499 * 109.47050 * 94.98156 * 17 15 13 19 19 H 1.48496 * 109.46884 * 214.98449 * 17 15 13 20 20 H 1.48502 * 109.47147 * 334.98479 * 17 15 13 21 21 N 1.35300 * 126.07653 * 85.00206 * 9 7 2 22 22 H 0.96995 * 127.04660 * 0.02562 * 21 9 7 23 23 H 1.08993 * 109.47579 * 298.62183 * 1 2 3 24 24 H 1.09002 * 109.47428 * 178.61430 * 1 2 3 25 25 H 1.09007 * 109.46492 * 58.61879 * 1 2 3 26 26 H 1.09007 * 110.48444 * 335.78589 * 4 2 1 27 27 H 1.09001 * 110.48382 * 98.42948 * 4 2 1 28 28 H 1.09001 * 110.75745 * 279.62979 * 5 4 2 29 29 H 1.09008 * 110.91404 * 156.32816 * 5 4 2 30 30 H 1.08996 * 110.48858 * 203.37567 * 6 5 4 31 31 H 1.09004 * 110.48735 * 80.73628 * 6 5 4 32 32 H 0.97006 * 119.99702 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0585 -0.7562 -1.2364 5 6 3.3137 -1.5012 -0.7181 6 6 2.8874 -1.9403 0.7048 7 6 2.0570 -0.7528 1.2342 8 1 2.6859 -0.0941 1.8331 9 6 0.9036 -1.2584 2.0619 10 7 0.3745 -0.6549 3.1012 11 7 -0.5952 -1.3539 3.5745 12 6 -0.7310 -2.4641 2.8543 13 6 -1.6710 -3.4833 3.0574 14 1 -1.7460 -4.2972 2.3515 15 6 -2.5142 -3.4465 4.1773 16 7 -2.5063 -2.4055 4.9673 17 14 -3.6489 -4.8855 4.5399 18 1 -2.9923 -5.8023 5.5061 19 1 -4.9186 -4.3804 5.1210 20 1 -3.9376 -5.6177 3.2806 21 7 0.2329 -2.4177 1.8698 22 1 0.3970 -3.0805 1.1809 23 1 -0.3634 0.4922 0.9020 24 1 -0.3634 -1.0274 -0.0249 25 1 -0.3632 0.5352 -0.8774 26 1 1.3143 -1.4670 -1.5958 27 1 2.3298 -0.0548 -2.0254 28 1 4.1710 -0.8295 -0.6744 29 1 3.5357 -2.3687 -1.3397 30 1 3.7635 -2.1030 1.3324 31 1 2.2771 -2.8423 0.6589 32 1 -3.0899 -2.3799 5.7417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307568086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:16 Heat of formation + Delta-G solvation = 43.949704 kcal Electronic energy + Delta-G solvation = -15226.647485 eV Core-core repulsion = 12801.211267 eV Total energy + Delta-G solvation = -2425.436218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87094 -38.00034 -33.53696 -31.74053 -31.00566 -30.06916 -27.66872 -25.30047 -24.48319 -21.24125 -20.50161 -20.11403 -18.76611 -17.07407 -15.99150 -15.73456 -14.90913 -14.25835 -13.97297 -13.42315 -13.33481 -12.84449 -12.31453 -11.81871 -11.43094 -11.26204 -11.20467 -10.94071 -10.83709 -10.59397 -10.45300 -10.36996 -10.30412 -10.10848 -9.47956 -9.33356 -8.85448 -8.19549 -7.44380 -6.53033 -4.47502 3.00649 3.11896 3.15235 3.61666 3.96036 4.49363 4.55371 4.82345 4.91014 5.03133 5.47327 5.52527 5.57094 5.65732 5.79909 5.81351 5.87447 5.98751 6.07313 6.22418 6.27561 6.35259 6.52672 6.54513 6.66965 6.87068 7.04699 7.25210 7.39186 7.64788 8.31991 8.34963 8.86012 9.14728 10.40723 10.91289 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050762 B = 0.007383 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.466696 B = 3791.702886 C = 3919.930936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.119 4.119 7 C 0.015 3.985 8 H 0.085 0.915 9 C 0.087 3.913 10 N -0.306 5.306 11 N -0.341 5.341 12 C 0.334 3.666 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.081 3.919 16 N -0.741 5.741 17 Si 0.916 3.084 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 N -0.633 5.633 22 H 0.399 0.601 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -0.846 -9.736 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.158 4.158 7 C -0.006 4.006 8 H 0.104 0.896 9 C -0.180 4.180 10 N -0.148 5.148 11 N -0.187 5.187 12 C 0.088 3.912 13 C -0.501 4.501 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.366 5.366 17 Si 0.740 3.260 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.188 1.188 21 N -0.252 5.252 22 H 0.235 0.765 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.213 0.501 -8.303 10.382 hybrid contribution -0.294 -2.059 -1.131 2.367 sum 5.919 -1.558 -9.433 11.245 Atomic orbital electron populations 1.21843 0.94526 1.01934 1.01122 1.21776 0.96435 0.98800 0.93571 0.91151 1.22472 0.97128 0.98898 0.97274 1.22483 0.97751 0.99659 0.96233 1.22442 0.99391 0.98054 0.95891 1.19913 0.91531 0.95642 0.93514 0.89626 1.23270 1.02624 0.89877 1.02187 1.74027 1.07393 1.26284 1.07096 1.75590 1.14456 1.03852 1.24825 1.21552 0.89098 0.95847 0.84729 1.18112 1.16179 1.06439 1.09350 0.90224 1.25734 0.96867 0.96592 0.95184 1.69969 1.30108 1.26108 1.10381 0.86196 0.79371 0.81080 0.79350 1.19609 1.20124 1.18817 1.43924 1.31039 1.20183 1.30066 0.76535 0.91707 0.92749 0.94132 0.91790 0.92047 0.91555 0.91913 0.91561 0.91982 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.89 37.16 0.29 -2.12 16 2 C -0.09 -1.31 3.50 -89.50 -0.31 -1.62 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.12 -1.48 6.36 -25.07 -0.16 -1.64 16 5 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 6 C -0.12 -1.69 6.35 -25.07 -0.16 -1.85 16 7 C 0.02 0.26 3.44 -90.65 -0.31 -0.05 16 8 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 9 C 0.09 1.95 4.73 -154.50 -0.73 1.22 16 10 N -0.31 -8.38 11.94 32.88 0.39 -7.99 16 11 N -0.34 -10.28 10.55 31.22 0.33 -9.95 16 12 C 0.33 9.24 7.72 -155.21 -1.20 8.05 16 13 C -0.46 -12.38 9.46 -38.12 -0.36 -12.74 16 14 H 0.08 1.96 7.86 -52.48 -0.41 1.54 16 15 C 0.08 2.12 5.49 -17.29 -0.09 2.02 16 16 N -0.74 -20.87 11.97 55.56 0.67 -20.20 16 17 Si 0.92 19.02 29.57 -169.99 -5.03 13.99 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 N -0.63 -14.44 5.11 -9.38 -0.05 -14.49 16 22 H 0.40 7.73 7.72 -40.82 -0.32 7.42 16 23 H 0.06 1.36 7.30 -51.93 -0.38 0.98 16 24 H 0.05 1.03 6.85 -51.93 -0.36 0.67 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.91 6.37 -51.93 -0.33 0.58 16 32 H 0.28 7.04 8.29 -40.82 -0.34 6.71 16 LS Contribution 261.54 15.07 3.94 3.94 Total: -1.00 -31.77 261.54 -7.25 -39.01 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.29 Total: 6.01 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.21 Total: -10.32 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 1.34 Total: -52.63 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.77 -7.25 -39.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307568086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.963 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds