Wall clock time and date at job start Mon Mar 30 2020 03:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.01828 * 2 1 4 4 C 1.54266 * 110.03580 * 238.54814 * 2 1 3 5 5 C 1.54886 * 104.19522 * 217.10840 * 4 2 1 6 6 C 1.54891 * 102.75064 * 37.94309 * 5 4 2 7 7 C 1.53877 * 110.02631 * 121.38168 * 2 1 3 8 8 H 1.09001 * 110.03458 * 238.61562 * 7 2 1 9 9 C 1.50698 * 110.03417 * 0.02562 * 7 2 1 10 10 N 1.31312 * 126.07758 * 264.68949 * 9 7 2 11 11 N 1.28568 * 110.20512 * 179.81973 * 10 9 7 12 12 C 1.33026 * 109.35413 * 0.44792 * 11 10 9 13 13 C 1.40127 * 126.65415 * 179.69551 * 12 11 10 14 14 H 1.08004 * 120.00163 * 174.36264 * 13 12 11 15 15 C 1.40238 * 120.00178 * 354.35836 * 13 12 11 16 16 N 1.30681 * 119.99848 * 6.02814 * 15 13 12 17 17 Si 1.86806 * 120.00021 * 186.02341 * 15 13 12 18 18 H 1.48499 * 109.47050 * 94.98156 * 17 15 13 19 19 H 1.48496 * 109.46884 * 214.98449 * 17 15 13 20 20 H 1.48502 * 109.47147 * 334.98479 * 17 15 13 21 21 N 1.35300 * 126.07653 * 85.00206 * 9 7 2 22 22 H 0.96995 * 127.04660 * 0.02562 * 21 9 7 23 23 H 1.08993 * 109.47579 * 298.62183 * 1 2 3 24 24 H 1.09002 * 109.47428 * 178.61430 * 1 2 3 25 25 H 1.09007 * 109.46492 * 58.61879 * 1 2 3 26 26 H 1.09007 * 110.48444 * 335.78589 * 4 2 1 27 27 H 1.09001 * 110.48382 * 98.42948 * 4 2 1 28 28 H 1.09001 * 110.75745 * 279.62979 * 5 4 2 29 29 H 1.09008 * 110.91404 * 156.32816 * 5 4 2 30 30 H 1.08996 * 110.48858 * 203.37567 * 6 5 4 31 31 H 1.09004 * 110.48735 * 80.73628 * 6 5 4 32 32 H 0.97006 * 119.99702 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0585 -0.7562 -1.2364 5 6 3.3137 -1.5012 -0.7181 6 6 2.8874 -1.9403 0.7048 7 6 2.0570 -0.7528 1.2342 8 1 2.6859 -0.0941 1.8331 9 6 0.9036 -1.2584 2.0619 10 7 0.3745 -0.6549 3.1012 11 7 -0.5952 -1.3539 3.5745 12 6 -0.7310 -2.4641 2.8543 13 6 -1.6710 -3.4833 3.0574 14 1 -1.7460 -4.2972 2.3515 15 6 -2.5142 -3.4465 4.1773 16 7 -2.5063 -2.4055 4.9673 17 14 -3.6489 -4.8855 4.5399 18 1 -2.9923 -5.8023 5.5061 19 1 -4.9186 -4.3804 5.1210 20 1 -3.9376 -5.6177 3.2806 21 7 0.2329 -2.4177 1.8698 22 1 0.3970 -3.0805 1.1809 23 1 -0.3634 0.4922 0.9020 24 1 -0.3634 -1.0274 -0.0249 25 1 -0.3632 0.5352 -0.8774 26 1 1.3143 -1.4670 -1.5958 27 1 2.3298 -0.0548 -2.0254 28 1 4.1710 -0.8295 -0.6744 29 1 3.5357 -2.3687 -1.3397 30 1 3.7635 -2.1030 1.3324 31 1 2.2771 -2.8423 0.6589 32 1 -3.0899 -2.3799 5.7417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307568086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:15 Heat of formation + Delta-G solvation = 23.427182 kcal Electronic energy + Delta-G solvation = -15227.537409 eV Core-core repulsion = 12801.211267 eV Total energy + Delta-G solvation = -2426.326141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.79771 -39.28675 -35.50635 -33.70487 -32.28728 -31.71031 -29.32580 -27.08643 -25.89237 -23.00010 -22.28171 -21.38005 -20.40119 -18.82487 -17.90512 -17.02177 -16.59640 -15.79496 -15.62570 -15.07322 -14.61924 -14.29406 -13.80272 -13.18748 -13.14396 -13.04464 -12.86546 -12.45768 -11.98971 -11.93919 -11.73652 -11.66593 -11.51611 -11.44404 -11.38846 -11.22263 -10.82086 -10.20595 -9.48300 -8.47863 -6.54893 1.33045 1.41757 1.58377 1.79846 2.21490 2.60594 2.71245 3.42353 3.67671 3.69314 3.78575 4.21386 4.43055 4.44013 4.58338 4.62937 4.73673 4.83415 4.93991 4.97479 5.04214 5.10601 5.26462 5.28440 5.31518 5.36153 5.40236 5.47490 5.56178 5.69186 6.30372 6.45053 6.85091 7.26375 8.49325 8.89706 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050762 B = 0.007383 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.466696 B = 3791.702886 C = 3919.930936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.086 0.914 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.118 4.118 7 C 0.005 3.995 8 H 0.086 0.914 9 C 0.128 3.872 10 N -0.364 5.364 11 N -0.396 5.396 12 C 0.308 3.692 13 C -0.488 4.488 14 H 0.097 0.903 15 C 0.029 3.971 16 N -0.794 5.794 17 Si 1.003 2.997 18 H -0.264 1.264 19 H -0.271 1.271 20 H -0.249 1.249 21 N -0.621 5.621 22 H 0.416 0.584 23 H 0.019 0.981 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -2.127 -12.072 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.104 0.896 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.156 4.156 7 C -0.016 4.016 8 H 0.104 0.896 9 C -0.141 4.141 10 N -0.204 5.204 11 N -0.241 5.241 12 C 0.059 3.941 13 C -0.528 4.528 14 H 0.115 0.885 15 C -0.190 4.190 16 N -0.420 5.420 17 Si 0.823 3.177 18 H -0.189 1.189 19 H -0.196 1.196 20 H -0.172 1.172 21 N -0.241 5.241 22 H 0.255 0.745 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.379 -0.769 -10.657 12.985 hybrid contribution -0.541 -1.567 -0.495 1.730 sum 6.838 -2.336 -11.152 13.289 Atomic orbital electron populations 1.21784 0.96680 1.00473 1.00107 1.21787 0.94372 0.99992 0.93991 0.89552 1.22443 0.97330 0.99093 0.96187 1.22460 0.97732 1.00697 0.93951 1.22458 0.98937 0.96117 0.98131 1.20303 0.89981 0.97439 0.93860 0.89563 1.24278 1.01547 0.88239 1.00083 1.73925 1.08749 1.27718 1.09981 1.75462 1.16243 1.05390 1.27009 1.21893 0.90485 0.95924 0.85815 1.18633 1.16740 1.06914 1.10546 0.88469 1.26917 0.98215 0.99589 0.94313 1.70123 1.31622 1.28919 1.11304 0.84897 0.76588 0.76652 0.79607 1.18907 1.19615 1.17212 1.43849 1.30026 1.20617 1.29600 0.74538 0.96133 0.94567 0.91540 0.92045 0.89381 0.89700 0.89761 0.90699 0.92746 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.89 71.98 0.57 -4.05 16 2 C -0.08 -2.29 3.50 -10.07 -0.04 -2.33 16 3 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.11 -2.31 6.36 31.67 0.20 -2.11 16 5 C -0.11 -2.02 6.91 31.88 0.22 -1.80 16 6 C -0.12 -3.01 6.35 31.67 0.20 -2.81 16 7 C 0.01 0.17 3.44 -10.81 -0.04 0.14 16 8 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 9 C 0.13 5.85 4.73 137.81 0.65 6.51 16 10 N -0.36 -20.84 11.94 -49.88 -0.60 -21.44 16 11 N -0.40 -25.13 10.55 -55.14 -0.58 -25.71 16 12 C 0.31 17.63 7.72 133.50 1.03 18.66 16 13 C -0.49 -26.78 9.46 23.21 0.22 -26.56 16 14 H 0.10 4.76 7.86 -2.91 -0.02 4.74 16 15 C 0.03 1.57 5.49 85.35 0.47 2.03 16 16 N -0.79 -46.52 11.97 21.88 0.26 -46.26 16 17 Si 1.00 39.18 29.57 68.60 2.03 41.21 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 21 N -0.62 -28.74 5.11 -183.57 -0.94 -29.67 16 22 H 0.42 15.96 7.72 -92.71 -0.72 15.24 16 23 H 0.02 0.86 7.30 -2.39 -0.02 0.85 16 24 H 0.04 1.35 6.85 -2.39 -0.02 1.34 16 25 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.06 1.31 7.84 -2.38 -0.02 1.29 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.47 6.37 -2.38 -0.02 1.45 16 32 H 0.28 14.92 8.29 -92.70 -0.77 14.15 16 Total: -1.00 -73.72 261.54 4.08 -69.65 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.41 Total: 24.55 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.49 Total: -12.32 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -1.85 Total: -123.09 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -73.72 4.08 -69.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307568086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.075 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds