Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38622 * 120.72146 * 2 1 4 4 N 1.32261 * 119.19439 * 179.69981 * 3 2 1 5 5 C 1.32506 * 120.74317 * 0.28674 * 4 3 2 6 6 N 1.38407 * 119.22039 * 179.97438 * 5 4 3 7 7 C 1.46494 * 119.99883 * 359.97438 * 6 5 4 8 8 H 1.08994 * 109.47503 * 325.00045 * 7 6 5 9 9 C 1.53002 * 109.47362 * 84.99898 * 7 6 5 10 10 C 1.50704 * 109.47288 * 204.99985 * 7 6 5 11 11 H 1.08000 * 119.99811 * 0.02562 * 10 7 6 12 12 C 1.37868 * 120.00239 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00191 * 180.02562 * 12 10 7 14 14 Si 1.86803 * 120.00094 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.47043 * 90.00277 * 14 12 10 16 16 H 1.48502 * 109.47271 * 210.00091 * 14 12 10 17 17 H 1.48499 * 109.47111 * 330.00542 * 14 12 10 18 18 N 1.32481 * 121.56508 * 0.02562 * 5 4 3 19 19 C 1.32293 * 120.74059 * 359.97438 * 18 5 4 20 20 C 1.50694 * 120.40428 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47783 * 89.99318 * 1 2 3 22 22 H 1.09002 * 109.47190 * 209.99638 * 1 2 3 23 23 H 1.09001 * 109.46868 * 329.99555 * 1 2 3 24 24 H 1.08002 * 120.40497 * 359.97438 * 3 2 1 25 25 H 0.97003 * 119.99975 * 179.97438 * 6 5 4 26 26 H 1.09001 * 109.47367 * 300.00298 * 9 7 6 27 27 H 1.09008 * 109.46831 * 59.99540 * 9 7 6 28 28 H 1.08997 * 109.47480 * 180.02562 * 9 7 6 29 29 H 0.97004 * 120.00229 * 179.97438 * 13 12 10 30 30 H 1.09002 * 109.47399 * 89.99488 * 20 19 18 31 31 H 1.09005 * 109.47526 * 210.00004 * 20 19 18 32 32 H 1.09007 * 109.46879 * 330.00277 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1917 0.0000 4 7 3.5373 1.1564 0.0060 5 6 4.1841 0.0000 0.0064 6 7 5.5681 -0.0001 0.0122 7 6 6.3006 1.2685 0.0175 8 1 5.7559 2.0051 -0.5730 9 6 6.4407 1.7707 1.4559 10 6 7.6695 1.0607 -0.5776 11 1 7.9642 0.0815 -0.9252 12 6 8.5457 2.1204 -0.6781 13 7 9.7401 1.9391 -1.1978 14 14 8.0358 3.8141 -0.0774 15 1 8.4072 3.9647 1.3525 16 1 8.7283 4.8535 -0.8808 17 1 6.5666 3.9705 -0.2263 18 7 3.5374 -1.1563 0.0002 19 6 2.2149 -1.1914 -0.0061 20 6 1.4871 -2.5109 -0.0125 21 1 -0.3635 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6936 2.1374 -0.0004 25 1 6.0531 -0.8402 0.0129 26 1 5.4506 1.9211 1.8863 27 1 6.9855 1.0340 2.0465 28 1 6.9853 2.7149 1.4598 29 1 10.3564 2.6848 -1.2688 30 1 1.3069 -2.8315 1.0136 31 1 0.5347 -2.3981 -0.5305 32 1 2.0934 -3.2578 -0.5252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307682132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 48.948083 kcal Electronic energy + Delta-G solvation = -14757.784010 eV Core-core repulsion = 12332.564538 eV Total energy + Delta-G solvation = -2425.219472 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57160 -36.41134 -33.94882 -33.43696 -32.02660 -29.71983 -28.68864 -26.05860 -25.05642 -22.96941 -21.98388 -20.06319 -18.09238 -16.85576 -16.11389 -15.21805 -14.92150 -14.31457 -13.84723 -13.50316 -13.33850 -13.06916 -12.88821 -12.83740 -12.34439 -12.18390 -11.95469 -11.85382 -11.37095 -10.80168 -10.42839 -10.20284 -10.16137 -9.62862 -9.49327 -9.18800 -8.67388 -8.56037 -7.25475 -6.19258 -4.21759 1.58892 1.64287 3.23937 3.35309 3.39441 3.65243 4.31839 4.32431 4.57255 4.81500 5.10045 5.15310 5.21519 5.32270 5.54371 5.58096 5.66364 5.76051 5.95228 6.02370 6.24381 6.34622 6.38769 6.57084 6.73071 6.91275 7.21379 7.44244 7.49715 7.79865 8.14879 8.51398 8.77590 8.99155 9.41000 10.93089 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050659 B = 0.007034 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.578487 B = 3979.984414 C = 4324.259390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.288 4.288 3 C 0.195 3.805 4 N -0.567 5.567 5 C 0.568 3.432 6 N -0.664 5.664 7 C 0.250 3.750 8 H 0.053 0.947 9 C -0.160 4.160 10 C -0.536 4.536 11 H 0.080 0.920 12 C 0.078 3.922 13 N -0.893 5.893 14 Si 0.886 3.114 15 H -0.277 1.277 16 H -0.294 1.294 17 H -0.260 1.260 18 N -0.582 5.582 19 C 0.216 3.784 20 C -0.104 4.104 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.157 0.843 25 H 0.409 0.591 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.267 0.733 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 -3.532 3.385 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.297 4.297 3 C 0.025 3.975 4 N -0.290 5.290 5 C 0.211 3.789 6 N -0.295 5.295 7 C 0.146 3.854 8 H 0.071 0.929 9 C -0.218 4.218 10 C -0.574 4.574 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.222 1.222 17 H -0.185 1.185 18 N -0.306 5.306 19 C 0.067 3.933 20 C -0.161 4.161 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.175 0.825 25 H 0.245 0.755 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.722 -3.254 3.329 16.396 hybrid contribution -0.696 0.688 0.338 1.035 sum -16.418 -2.566 3.667 17.017 Atomic orbital electron populations 1.20402 0.90328 1.02150 1.01498 1.20906 0.98007 0.94890 1.15911 1.22763 0.88791 0.97530 0.88399 1.68042 1.09725 1.28660 1.22572 1.19547 0.87964 0.84067 0.87297 1.44812 0.99102 1.11338 1.74226 1.19135 0.92040 0.81381 0.92852 0.92915 1.22470 0.99188 1.00322 0.99838 1.21055 0.96319 0.98390 1.41612 0.90200 1.24813 0.94495 0.98846 0.94360 1.69871 1.06629 1.32246 1.44210 0.86861 0.79586 0.83774 0.78171 1.20348 1.22186 1.18480 1.67760 1.09590 1.29018 1.24235 1.21141 0.88595 0.95123 0.88463 1.20740 0.99446 0.92896 1.03049 0.92119 0.91951 0.92072 0.82545 0.75458 0.94614 0.92992 0.93412 0.92279 0.90210 0.90400 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.27 36.00 0.33 -0.47 16 2 C -0.29 -3.99 5.91 -104.35 -0.62 -4.61 16 3 C 0.19 3.06 11.00 -17.23 -0.19 2.87 16 4 N -0.57 -11.40 9.20 -13.93 -0.13 -11.53 16 5 C 0.57 11.86 8.40 -322.81 -2.71 9.14 16 6 N -0.66 -14.70 5.21 -56.93 -0.30 -15.00 16 7 C 0.25 6.11 2.14 -69.08 -0.15 5.96 16 8 H 0.05 1.38 6.56 -51.93 -0.34 1.04 16 9 C -0.16 -3.65 8.98 37.16 0.33 -3.31 16 10 C -0.54 -14.92 9.31 -34.44 -0.32 -15.24 16 11 H 0.08 2.37 7.98 -52.49 -0.42 1.96 16 12 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 13 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 14 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 15 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 18 N -0.58 -10.96 10.40 -10.16 -0.11 -11.07 16 19 C 0.22 3.30 6.82 -82.27 -0.56 2.73 16 20 C -0.10 -1.10 9.44 36.00 0.34 -0.76 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.50 6.83 -51.93 -0.35 0.14 16 23 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 25 H 0.41 8.67 8.65 -40.82 -0.35 8.31 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 28 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.64 6.83 -51.93 -0.35 0.29 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 265.69 15.07 4.00 4.00 Total: -1.00 -31.48 265.69 -7.67 -39.15 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.13 Total: 4.39 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -3.64 Total: -1.55 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.24 Total: -63.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.48 -7.67 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307682132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.097 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds