Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38622 * 120.72146 * 2 1 4 4 N 1.32261 * 119.19439 * 179.69981 * 3 2 1 5 5 C 1.32506 * 120.74317 * 0.28674 * 4 3 2 6 6 N 1.38407 * 119.22039 * 179.97438 * 5 4 3 7 7 C 1.46494 * 119.99883 * 359.97438 * 6 5 4 8 8 H 1.08994 * 109.47503 * 325.00045 * 7 6 5 9 9 C 1.53002 * 109.47362 * 84.99898 * 7 6 5 10 10 C 1.50704 * 109.47288 * 204.99985 * 7 6 5 11 11 H 1.08000 * 119.99811 * 0.02562 * 10 7 6 12 12 C 1.37868 * 120.00239 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00191 * 180.02562 * 12 10 7 14 14 Si 1.86803 * 120.00094 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.47043 * 90.00277 * 14 12 10 16 16 H 1.48502 * 109.47271 * 210.00091 * 14 12 10 17 17 H 1.48499 * 109.47111 * 330.00542 * 14 12 10 18 18 N 1.32481 * 121.56508 * 0.02562 * 5 4 3 19 19 C 1.32293 * 120.74059 * 359.97438 * 18 5 4 20 20 C 1.50694 * 120.40428 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47783 * 89.99318 * 1 2 3 22 22 H 1.09002 * 109.47190 * 209.99638 * 1 2 3 23 23 H 1.09001 * 109.46868 * 329.99555 * 1 2 3 24 24 H 1.08002 * 120.40497 * 359.97438 * 3 2 1 25 25 H 0.97003 * 119.99975 * 179.97438 * 6 5 4 26 26 H 1.09001 * 109.47367 * 300.00298 * 9 7 6 27 27 H 1.09008 * 109.46831 * 59.99540 * 9 7 6 28 28 H 1.08997 * 109.47480 * 180.02562 * 9 7 6 29 29 H 0.97004 * 120.00229 * 179.97438 * 13 12 10 30 30 H 1.09002 * 109.47399 * 89.99488 * 20 19 18 31 31 H 1.09005 * 109.47526 * 210.00004 * 20 19 18 32 32 H 1.09007 * 109.46879 * 330.00277 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1917 0.0000 4 7 3.5373 1.1564 0.0060 5 6 4.1841 0.0000 0.0064 6 7 5.5681 -0.0001 0.0122 7 6 6.3006 1.2685 0.0175 8 1 5.7559 2.0051 -0.5730 9 6 6.4407 1.7707 1.4559 10 6 7.6695 1.0607 -0.5776 11 1 7.9642 0.0815 -0.9252 12 6 8.5457 2.1204 -0.6781 13 7 9.7401 1.9391 -1.1978 14 14 8.0358 3.8141 -0.0774 15 1 8.4072 3.9647 1.3525 16 1 8.7283 4.8535 -0.8808 17 1 6.5666 3.9705 -0.2263 18 7 3.5374 -1.1563 0.0002 19 6 2.2149 -1.1914 -0.0061 20 6 1.4871 -2.5109 -0.0125 21 1 -0.3635 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6936 2.1374 -0.0004 25 1 6.0531 -0.8402 0.0129 26 1 5.4506 1.9211 1.8863 27 1 6.9855 1.0340 2.0465 28 1 6.9853 2.7149 1.4598 29 1 10.3564 2.6848 -1.2688 30 1 1.3069 -2.8315 1.0136 31 1 0.5347 -2.3981 -0.5305 32 1 2.0934 -3.2578 -0.5252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307682132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 28.361089 kcal Electronic energy + Delta-G solvation = -14758.676729 eV Core-core repulsion = 12332.564538 eV Total energy + Delta-G solvation = -2426.112191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88322 -38.04813 -35.39604 -34.87204 -33.81905 -31.33387 -29.75521 -27.44125 -26.88775 -24.17342 -23.49723 -21.69682 -19.72674 -18.45825 -17.81503 -17.05436 -16.27030 -15.48226 -15.37446 -15.11561 -14.89092 -14.31690 -14.18274 -14.03865 -13.64437 -13.56716 -13.27393 -13.18855 -12.75371 -12.67686 -12.16103 -11.72078 -11.51944 -11.48662 -11.25813 -11.00564 -10.67598 -9.90636 -8.71631 -8.38849 -6.46147 0.34794 0.36442 1.28879 1.35850 1.47166 2.15035 2.26744 2.95092 3.01797 3.38026 3.73771 3.88918 4.19457 4.29158 4.45521 4.58155 4.66231 4.70579 4.78569 4.84147 4.96582 4.98011 5.13738 5.22621 5.24141 5.33924 5.47240 5.66248 5.91015 6.22530 6.31740 6.56055 6.81611 7.18471 7.55849 8.77099 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050659 B = 0.007034 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.578487 B = 3979.984414 C = 4324.259390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.266 4.266 3 C 0.176 3.824 4 N -0.600 5.600 5 C 0.546 3.454 6 N -0.682 5.682 7 C 0.264 3.736 8 H 0.037 0.963 9 C -0.151 4.151 10 C -0.541 4.541 11 H 0.044 0.956 12 C 0.026 3.974 13 N -0.937 5.937 14 Si 0.947 3.053 15 H -0.260 1.260 16 H -0.291 1.291 17 H -0.251 1.251 18 N -0.601 5.601 19 C 0.195 3.805 20 C -0.100 4.100 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.191 0.809 25 H 0.406 0.594 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.554 -2.999 4.279 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.274 4.274 3 C 0.009 3.991 4 N -0.324 5.324 5 C 0.189 3.811 6 N -0.315 5.315 7 C 0.159 3.841 8 H 0.055 0.945 9 C -0.209 4.209 10 C -0.579 4.579 11 H 0.062 0.938 12 C -0.174 4.174 13 N -0.576 5.576 14 Si 0.773 3.227 15 H -0.186 1.186 16 H -0.218 1.218 17 H -0.175 1.175 18 N -0.325 5.325 19 C 0.048 3.952 20 C -0.157 4.157 21 H 0.095 0.905 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.207 0.793 25 H 0.242 0.758 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.231 -2.739 4.230 19.880 hybrid contribution 0.174 0.387 0.007 0.425 sum -19.057 -2.352 4.237 19.663 Atomic orbital electron populations 1.20546 0.86446 1.04136 1.03100 1.21466 1.00569 0.93572 1.11819 1.23454 0.87672 0.99884 0.88087 1.67993 1.11957 1.28697 1.23719 1.19575 0.87415 0.85176 0.88914 1.44493 1.00090 1.10114 1.76775 1.18718 0.89857 0.82294 0.93227 0.94534 1.22334 0.99891 0.99992 0.98691 1.21292 0.98227 0.96998 1.41372 0.93753 1.25647 0.94322 1.02909 0.94475 1.69999 1.07997 1.33693 1.45939 0.85878 0.79630 0.78742 0.78427 1.18600 1.21821 1.17531 1.67775 1.11609 1.28416 1.24738 1.22052 0.87662 0.97843 0.87691 1.20881 1.00020 0.90215 1.04540 0.90463 0.89884 0.90310 0.79256 0.75772 0.93269 0.92894 0.93664 0.91974 0.88411 0.87283 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.27 71.24 0.66 -0.48 16 2 C -0.27 -6.50 5.91 -19.69 -0.12 -6.62 16 3 C 0.18 5.12 11.00 84.72 0.93 6.05 16 4 N -0.60 -23.71 9.20 -197.98 -1.82 -25.53 16 5 C 0.55 22.94 8.40 261.49 2.20 25.14 16 6 N -0.68 -31.16 5.21 -334.02 -1.74 -32.91 16 7 C 0.26 13.15 2.14 44.25 0.09 13.25 16 8 H 0.04 1.94 6.56 -2.39 -0.02 1.92 16 9 C -0.15 -6.80 8.98 71.98 0.65 -6.16 16 10 C -0.54 -31.26 9.31 25.60 0.24 -31.02 16 11 H 0.04 2.80 7.98 -2.91 -0.02 2.78 16 12 C 0.03 1.50 5.45 84.65 0.46 1.96 16 13 N -0.94 -58.03 13.96 21.44 0.30 -57.73 16 14 Si 0.95 45.07 24.37 68.60 1.67 46.74 16 15 H -0.26 -11.65 6.87 99.48 0.68 -10.97 16 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.25 -11.52 6.53 99.48 0.65 -10.87 16 18 N -0.60 -22.44 10.40 -186.04 -1.93 -24.37 16 19 C 0.20 5.51 6.82 42.57 0.29 5.80 16 20 C -0.10 -1.78 9.44 71.23 0.67 -1.11 16 21 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.08 0.84 6.83 -2.39 -0.02 0.83 16 23 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 24 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 25 H 0.41 18.21 8.65 -92.71 -0.80 17.41 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 27 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 28 H 0.04 2.04 3.27 -2.39 -0.01 2.03 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.27 6.83 -2.38 -0.02 1.25 16 32 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -70.59 265.69 2.80 -67.79 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.25 Total: 19.19 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.08 Total: 6.81 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -5.20 Total: -140.53 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.74 kcal Total: -70.59 2.80 -67.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307682132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.151 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds