Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 N 1.46898 * 109.47293 * 89.99701 * 6 5 4 8 8 C 1.46906 * 111.00408 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47218 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46585 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00634 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99931 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00213 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47003 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46968 * 119.99964 * 14 12 10 17 17 H 1.48498 * 109.46784 * 239.99743 * 14 12 10 18 18 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 19 19 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 20 20 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 21 21 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 22 22 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 23 23 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.46989 * 209.99307 * 6 5 4 25 25 H 1.08997 * 109.47678 * 329.99289 * 6 5 4 26 26 H 1.00901 * 111.00225 * 56.04518 * 7 6 5 27 27 H 1.08998 * 109.46981 * 300.00509 * 8 7 6 28 28 H 1.09007 * 109.46422 * 59.99586 * 8 7 6 29 29 H 1.08999 * 109.47432 * 299.99739 * 9 8 7 30 30 H 1.09003 * 109.46987 * 60.00755 * 9 8 7 31 31 H 0.97002 * 119.99539 * 180.02562 * 13 12 10 32 32 H 1.08007 * 120.44813 * 180.29354 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 7 6.1830 -0.0030 1.3721 8 6 7.6517 -0.0036 1.4056 9 6 8.1287 -0.0061 2.8593 10 6 9.6353 -0.0061 2.8935 11 1 10.1965 -0.0041 1.9707 12 6 10.2974 -0.0088 4.1029 13 7 9.6141 -0.0107 5.2266 14 14 12.1650 -0.0081 4.1453 15 1 12.6916 -0.0051 2.7569 16 1 12.6434 1.2029 4.8593 17 1 12.6444 -1.2220 4.8536 18 6 3.4712 -1.1904 0.0013 19 7 2.1484 -1.1514 0.0005 20 1 -0.3632 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 3.9907 2.1374 0.0001 24 1 6.0492 -0.8888 -0.5280 25 1 6.0492 0.8911 -0.5242 26 1 5.8096 -0.7855 1.8882 27 1 8.0262 -0.8926 0.8983 28 1 8.0269 0.8873 0.9019 29 1 7.7542 0.8832 3.3662 30 1 7.7535 -0.8968 3.3633 31 1 10.0800 -0.0122 6.0774 32 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379650268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = 10.885690 kcal Electronic energy + Delta-G solvation = -13917.123537 eV Core-core repulsion = 11490.253556 eV Total energy + Delta-G solvation = -2426.869981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05895 -37.80555 -35.42283 -34.70478 -34.10137 -31.61688 -29.55210 -26.62169 -25.65427 -24.85774 -22.70599 -22.41824 -18.77314 -18.51204 -17.69030 -16.85177 -16.38622 -16.29980 -15.66161 -15.34849 -14.59343 -14.35101 -14.19823 -14.06294 -13.68054 -13.41865 -13.20320 -12.93242 -12.86692 -12.44185 -12.00726 -11.85113 -11.83345 -11.39547 -11.26728 -10.57186 -10.28780 -10.23287 -9.31188 -8.20254 -6.31613 -0.14188 0.08802 1.41475 1.41858 1.55055 2.40848 2.68082 3.04381 3.13785 3.19338 3.44361 3.68281 3.80193 3.91474 4.31100 4.52192 4.54387 4.62177 4.70554 4.72140 4.77383 5.02854 5.05919 5.09002 5.45062 5.48012 5.66743 5.77736 5.96050 6.11291 6.24436 6.45781 6.86700 7.07843 7.38097 8.92109 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.073350 B = 0.004156 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.641494 B = 6736.027228 C = 6817.765826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.293 3.707 3 N -0.538 5.538 4 C 0.162 3.838 5 C -0.189 4.189 6 C 0.111 3.889 7 N -0.696 5.696 8 C 0.085 3.915 9 C 0.028 3.972 10 C -0.542 4.542 11 H 0.064 0.936 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.150 3.850 19 N -0.537 5.537 20 H 0.099 0.901 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.183 0.817 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.337 0.663 27 H 0.027 0.973 28 H 0.065 0.935 29 H -0.007 1.007 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.257 -0.909 -12.662 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.026 3.974 3 N -0.253 5.253 4 C -0.004 4.004 5 C -0.193 4.193 6 C -0.018 4.018 7 N -0.327 5.327 8 C -0.044 4.044 9 C -0.009 4.009 10 C -0.580 4.580 11 H 0.082 0.918 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.792 3.208 15 H -0.183 1.183 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.016 4.016 19 N -0.251 5.251 20 H 0.118 0.882 21 H 0.111 0.889 22 H 0.110 0.890 23 H 0.200 0.800 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.155 0.845 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.294 -0.221 -12.431 18.945 hybrid contribution 2.110 -0.871 0.318 2.304 sum -12.185 -1.092 -12.114 17.216 Atomic orbital electron populations 1.20653 0.83633 1.04808 1.04855 1.23953 0.99759 0.83457 0.90196 1.68358 1.10544 1.30876 1.15518 1.23499 0.89184 0.99430 0.88315 1.21619 0.98443 0.95580 1.03672 1.20725 0.87983 1.02990 0.90119 1.60564 1.08757 1.50200 1.13145 1.21800 0.85522 0.99456 0.97588 1.18950 0.94690 0.95001 0.92262 1.21660 0.93003 1.50581 0.92792 0.91815 1.25997 1.03917 0.94717 0.95302 1.70122 1.37556 1.51626 0.98050 0.85365 0.79108 0.77682 0.78672 1.18324 1.20526 1.20479 1.23553 0.89477 0.99246 0.89281 1.68342 1.10450 1.30811 1.15520 0.88244 0.88941 0.89011 0.80003 0.92529 0.88892 0.84528 0.95510 0.91684 0.98891 0.99157 0.92812 0.79720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.32 71.24 0.74 -0.60 16 2 C 0.29 7.20 7.64 138.75 1.06 8.26 16 3 N -0.54 -14.11 10.33 -187.84 -1.94 -16.05 16 4 C 0.16 3.97 11.01 84.70 0.93 4.90 16 5 C -0.19 -4.48 5.43 -19.69 -0.11 -4.59 16 6 C 0.11 2.68 5.86 85.56 0.50 3.19 16 7 N -0.70 -22.72 6.49 -517.92 -3.36 -26.08 16 8 C 0.08 3.33 5.62 86.30 0.49 3.81 16 9 C 0.03 1.48 5.23 29.85 0.16 1.64 16 10 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 11 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 12 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 13 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 14 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 C 0.15 3.50 11.01 84.70 0.93 4.43 16 19 N -0.54 -13.67 10.34 -187.84 -1.94 -15.61 16 20 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 24 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 25 H 0.09 2.08 8.10 -2.39 -0.02 2.06 16 26 H 0.34 11.01 8.72 -89.69 -0.78 10.23 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -67.17 282.09 0.78 -66.39 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.32 Total: 10.87 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 5.39 Total: -8.73 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -6.96 Total: -114.35 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.17 0.78 -66.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379650268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.275 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds