Wall clock time and date at job start Mon Mar 30 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 C 1.53001 * 109.46980 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47166 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00327 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99356 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00418 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46722 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.46830 * 119.99911 * 11 9 7 14 14 H 1.48495 * 109.47286 * 240.00029 * 11 9 7 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 C 1.38599 * 120.79322 * 79.72454 * 15 2 1 17 17 N 1.32339 * 119.10067 * 179.72022 * 16 15 2 18 18 C 1.31796 * 120.81634 * 0.56053 * 17 16 15 19 19 N 1.31800 * 121.75421 * 359.71632 * 18 17 16 20 20 C 1.32326 * 120.81848 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 25 25 H 1.09000 * 109.47514 * 299.99609 * 5 4 2 26 26 H 1.08999 * 109.47620 * 60.00050 * 5 4 2 27 27 H 1.08998 * 109.47159 * 299.99923 * 6 5 4 28 28 H 1.09001 * 109.47307 * 59.99948 * 6 5 4 29 29 H 0.97002 * 119.99189 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.45537 * 0.02562 * 16 15 2 31 31 H 1.08004 * 119.12453 * 179.72501 * 18 17 16 32 32 H 1.08002 * 120.44950 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 6 2.5963 -0.5326 -3.5742 7 6 2.6601 0.4061 -4.7514 8 1 2.3642 1.4383 -4.6357 9 6 3.0972 -0.0526 -5.9760 10 7 3.4590 -1.3092 -6.1165 11 14 3.1756 1.1107 -7.4354 12 1 2.7184 2.4604 -7.0176 13 1 4.5740 1.1929 -7.9282 14 1 2.2974 0.6038 -8.5203 15 6 2.0324 -0.7104 1.2304 16 6 2.0687 -2.0948 1.2854 17 7 2.5215 -2.6839 2.3805 18 6 2.9238 -1.9710 3.4135 19 7 2.8983 -0.6533 3.3991 20 6 2.4641 0.0048 2.3363 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 2.9174 -1.1204 -1.0288 25 1 1.0871 0.6165 -2.5525 26 1 2.7589 1.0464 -2.1182 27 1 3.5918 -0.9259 -3.3683 28 1 1.9203 -1.3565 -3.8031 29 1 3.7668 -1.6318 -6.9780 30 1 1.7367 -2.6849 0.4440 31 1 3.2841 -2.4802 4.2952 32 1 2.4462 1.0846 2.3308 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389238533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:00 Heat of formation + Delta-G solvation = 35.159732 kcal Electronic energy + Delta-G solvation = -14267.600484 eV Core-core repulsion = 11841.783104 eV Total energy + Delta-G solvation = -2425.817380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.11566 -37.06931 -33.75659 -33.68611 -32.09033 -29.89544 -28.11704 -25.01091 -24.71886 -23.72851 -20.81634 -20.55882 -17.70266 -17.54664 -16.33495 -15.83957 -14.96494 -14.59079 -14.41380 -13.84177 -13.70192 -13.55151 -12.91241 -12.60150 -12.29945 -11.95856 -11.59525 -11.11776 -10.99750 -10.86914 -10.68409 -10.51380 -10.06168 -9.62720 -9.33812 -9.31026 -9.15689 -8.39588 -8.00929 -6.03448 -4.06303 0.80399 1.00630 3.28971 3.36573 3.40096 3.70330 4.04788 4.14282 4.35341 4.50049 4.57286 4.66330 5.04590 5.26819 5.32901 5.44174 5.48144 5.75855 5.87889 6.00340 6.21541 6.27728 6.32355 6.37607 6.85735 6.90711 7.34673 7.64416 7.71967 7.84899 7.98536 8.02024 8.38230 9.01065 9.57943 11.07978 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054094 B = 0.004931 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.492973 B = 5676.841522 C = 5861.346881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.129 3.871 3 H 0.054 0.946 4 N -0.685 5.685 5 C 0.066 3.934 6 C 0.025 3.975 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C -0.186 4.186 16 C 0.166 3.834 17 N -0.520 5.520 18 C 0.281 3.719 19 N -0.523 5.523 20 C 0.148 3.852 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.337 0.663 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.177 0.823 31 H 0.193 0.807 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 1.487 15.537 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 H 0.072 0.928 4 N -0.316 5.316 5 C -0.062 4.062 6 C -0.013 4.013 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.190 4.190 16 C 0.000 4.000 17 N -0.233 5.233 18 C -0.007 4.007 19 N -0.236 5.236 20 C -0.018 4.018 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.155 0.845 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.210 0.790 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.591 0.646 16.057 16.466 hybrid contribution 0.620 1.549 -1.391 2.172 sum -2.972 2.195 14.666 15.124 Atomic orbital electron populations 1.21783 0.93409 1.02603 1.01415 1.20349 0.96217 0.95267 0.86408 0.92842 1.60781 1.33233 1.34120 1.03482 1.22237 0.99863 0.93464 0.90616 1.19076 0.96259 0.95874 0.90062 1.21194 1.43996 0.96382 0.94544 0.92686 1.25004 0.95345 0.95100 0.98881 1.69986 1.44352 1.14389 1.24442 0.86531 0.77659 0.81103 0.82681 1.19757 1.21029 1.20936 1.21920 1.01720 0.96766 0.98607 1.23308 0.89584 0.92026 0.95089 1.68500 1.11619 1.41928 1.01267 1.24954 0.92411 0.86913 0.96409 1.68417 1.15996 1.11003 1.28197 1.23136 0.90120 1.00922 0.87653 0.91905 0.93066 0.91570 0.84479 0.91971 0.96432 0.96837 0.95531 0.93003 0.80555 0.79041 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.40 37.16 0.35 -1.26 16 2 C 0.13 1.67 2.85 -68.86 -0.20 1.47 16 3 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 4 N -0.68 -11.10 5.78 -107.95 -0.62 -11.72 16 5 C 0.07 1.30 5.42 -3.82 -0.02 1.28 16 6 C 0.02 0.62 5.23 -27.88 -0.15 0.48 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 11 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C -0.19 -2.26 4.73 -104.36 -0.49 -2.75 16 16 C 0.17 2.12 10.32 -17.20 -0.18 1.94 16 17 N -0.52 -6.77 10.44 -14.58 -0.15 -6.92 16 18 C 0.28 3.26 12.29 -92.15 -1.13 2.13 16 19 N -0.52 -6.40 10.44 -14.58 -0.15 -6.56 16 20 C 0.15 1.69 10.97 -17.21 -0.19 1.50 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.85 7.45 -51.93 -0.39 0.46 16 24 H 0.34 5.48 8.02 -39.29 -0.32 5.16 16 25 H 0.06 1.22 7.44 -51.93 -0.39 0.84 16 26 H 0.02 0.34 8.06 -51.93 -0.42 -0.07 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.18 2.19 7.81 -52.49 -0.41 1.78 16 31 H 0.19 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 277.79 15.07 4.19 4.19 Total: -1.00 -30.48 277.79 -7.84 -38.31 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.39 Total: 0.71 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.42 Total: -8.50 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.19 Total: -51.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.48 -7.84 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389238533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.472 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds