Wall clock time and date at job start Mon Mar 30 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 C 1.53001 * 109.46980 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47166 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00327 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99356 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00418 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46722 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.46830 * 119.99911 * 11 9 7 14 14 H 1.48495 * 109.47286 * 240.00029 * 11 9 7 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 C 1.38599 * 120.79322 * 79.72454 * 15 2 1 17 17 N 1.32339 * 119.10067 * 179.72022 * 16 15 2 18 18 C 1.31796 * 120.81634 * 0.56053 * 17 16 15 19 19 N 1.31800 * 121.75421 * 359.71632 * 18 17 16 20 20 C 1.32326 * 120.81848 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 25 25 H 1.09000 * 109.47514 * 299.99609 * 5 4 2 26 26 H 1.08999 * 109.47620 * 60.00050 * 5 4 2 27 27 H 1.08998 * 109.47159 * 299.99923 * 6 5 4 28 28 H 1.09001 * 109.47307 * 59.99948 * 6 5 4 29 29 H 0.97002 * 119.99189 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.45537 * 0.02562 * 16 15 2 31 31 H 1.08004 * 119.12453 * 179.72501 * 18 17 16 32 32 H 1.08002 * 120.44950 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 6 2.5963 -0.5326 -3.5742 7 6 2.6601 0.4061 -4.7514 8 1 2.3642 1.4383 -4.6357 9 6 3.0972 -0.0526 -5.9760 10 7 3.4590 -1.3092 -6.1165 11 14 3.1756 1.1107 -7.4354 12 1 2.7184 2.4604 -7.0176 13 1 4.5740 1.1929 -7.9282 14 1 2.2974 0.6038 -8.5203 15 6 2.0324 -0.7104 1.2304 16 6 2.0687 -2.0948 1.2854 17 7 2.5215 -2.6839 2.3805 18 6 2.9238 -1.9710 3.4135 19 7 2.8983 -0.6533 3.3991 20 6 2.4641 0.0048 2.3363 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 2.9174 -1.1204 -1.0288 25 1 1.0871 0.6165 -2.5525 26 1 2.7589 1.0464 -2.1182 27 1 3.5918 -0.9259 -3.3683 28 1 1.9203 -1.3565 -3.8031 29 1 3.7668 -1.6318 -6.9780 30 1 1.7367 -2.6849 0.4440 31 1 3.2841 -2.4802 4.2952 32 1 2.4462 1.0846 2.3308 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389238533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:00 Heat of formation + Delta-G solvation = 15.311683 kcal Electronic energy + Delta-G solvation = -14268.461160 eV Core-core repulsion = 11841.783104 eV Total energy + Delta-G solvation = -2426.678056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04922 -38.31888 -35.51641 -34.68362 -33.68973 -31.19445 -29.61607 -26.43737 -25.70379 -25.15367 -22.46429 -21.77599 -18.66387 -18.56971 -18.31904 -17.15334 -16.42158 -15.96421 -15.71156 -15.25749 -14.61966 -14.52960 -14.38108 -14.12616 -13.84817 -13.14627 -12.96455 -12.87371 -12.66772 -12.39028 -11.97742 -11.81976 -11.60877 -11.38061 -11.21311 -10.56471 -10.41378 -10.25296 -9.34604 -8.19808 -6.30869 -0.11440 0.07098 1.41412 1.41828 1.54815 2.41069 2.77606 3.13576 3.14493 3.23766 3.34333 3.61952 3.68270 4.02794 4.36134 4.40708 4.54984 4.56468 4.65314 4.84548 4.93103 5.01595 5.09013 5.35858 5.42747 5.47312 5.67980 5.79205 5.93202 6.13625 6.26019 6.45747 6.87309 7.07182 7.38781 8.92518 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054094 B = 0.004931 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.492973 B = 5676.841522 C = 5861.346881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.134 3.866 3 H 0.065 0.935 4 N -0.688 5.688 5 C 0.086 3.914 6 C 0.030 3.970 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.260 1.260 13 H -0.280 1.280 14 H -0.279 1.279 15 C -0.188 4.188 16 C 0.157 3.843 17 N -0.539 5.539 18 C 0.279 3.721 19 N -0.534 5.534 20 C 0.152 3.848 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.336 0.664 25 H 0.065 0.935 26 H 0.022 0.978 27 H -0.011 1.011 28 H -0.004 1.004 29 H 0.263 0.737 30 H 0.172 0.828 31 H 0.222 0.778 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 3.062 16.339 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.023 3.977 3 H 0.083 0.917 4 N -0.320 5.320 5 C -0.043 4.043 6 C -0.007 4.007 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.790 3.210 12 H -0.184 1.184 13 H -0.205 1.205 14 H -0.205 1.205 15 C -0.192 4.192 16 C -0.009 4.009 17 N -0.252 5.252 18 C -0.008 4.008 19 N -0.247 5.247 20 C -0.014 4.014 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.007 0.993 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.189 0.811 31 H 0.238 0.762 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.846 2.225 16.880 17.455 hybrid contribution 0.701 1.011 -1.562 1.989 sum -3.145 3.236 15.317 15.968 Atomic orbital electron populations 1.21767 0.92579 1.02434 1.02114 1.20357 0.96734 0.95465 0.85138 0.91699 1.60670 1.33284 1.33866 1.04144 1.21825 0.99609 0.93077 0.89764 1.18933 0.94345 0.95174 0.92298 1.21656 1.43711 0.97070 0.95613 0.91963 1.25962 0.94851 0.96757 1.02169 1.70120 1.45341 1.16461 1.25368 0.85393 0.77767 0.79205 0.78638 1.18399 1.20549 1.20462 1.21766 1.02500 0.96367 0.98606 1.23325 0.89830 0.92532 0.95181 1.68530 1.12460 1.42497 1.01739 1.25571 0.91382 0.87015 0.96807 1.68518 1.16459 1.11271 1.28463 1.23561 0.88742 1.02154 0.86941 0.92554 0.90736 0.92446 0.84599 0.91632 0.95992 0.99309 0.98553 0.92821 0.81054 0.76197 0.79161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.40 71.98 0.68 -2.25 16 2 C 0.13 3.25 2.85 44.17 0.13 3.37 16 3 H 0.07 1.48 7.70 -2.39 -0.02 1.46 16 4 N -0.69 -22.07 5.78 -495.43 -2.86 -24.93 16 5 C 0.09 3.36 5.42 86.30 0.47 3.83 16 6 C 0.03 1.55 5.23 29.85 0.16 1.71 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 11 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 15 C -0.19 -4.27 4.73 -19.69 -0.09 -4.36 16 16 C 0.16 3.90 10.32 84.70 0.87 4.77 16 17 N -0.54 -13.50 10.44 -200.03 -2.09 -15.58 16 18 C 0.28 5.98 12.29 180.88 2.22 8.21 16 19 N -0.53 -11.89 10.44 -200.04 -2.09 -13.98 16 20 C 0.15 3.11 10.97 84.70 0.93 4.04 16 21 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.38 7.45 -2.39 -0.02 1.37 16 24 H 0.34 10.96 8.02 -89.69 -0.72 10.24 16 25 H 0.07 2.52 7.44 -2.39 -0.02 2.51 16 26 H 0.02 0.84 8.06 -2.39 -0.02 0.82 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.17 4.31 7.81 -2.91 -0.02 4.29 16 31 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -65.12 277.79 1.72 -63.41 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.39 Total: 11.91 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 6.06 Total: -10.26 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -6.75 Total: -110.82 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.12 1.72 -63.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389238533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.719 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds