Wall clock time and date at job start Mon Mar 30 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46903 * 111.00066 * 58.94896 * 12 2 1 14 14 C 1.46906 * 110.99440 * 294.99743 * 12 2 1 15 15 C 1.50698 * 109.46791 * 189.99797 * 14 12 2 16 16 C 1.38620 * 120.44704 * 95.00349 * 15 14 12 17 17 C 1.38584 * 118.39853 * 180.02562 * 16 15 14 18 18 N 1.32351 * 119.10539 * 359.97438 * 17 16 15 19 19 C 1.31779 * 120.81939 * 0.02562 * 18 17 16 20 20 N 1.31820 * 121.75513 * 359.72177 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.46799 * 60.00373 * 13 12 2 26 26 H 1.08995 * 109.46967 * 180.02562 * 13 12 2 27 27 H 1.09002 * 109.46933 * 300.00619 * 13 12 2 28 28 H 1.08996 * 109.47414 * 309.99759 * 14 12 2 29 29 H 1.08997 * 109.46846 * 70.00181 * 14 12 2 30 30 H 1.07994 * 120.80398 * 0.02562 * 16 15 14 31 31 H 1.07991 * 120.44307 * 180.02562 * 17 16 15 32 32 H 1.07995 * 119.12332 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5571 3.6005 16 6 3.5656 -0.0154 4.0405 17 6 4.1911 -0.5977 5.1315 18 7 3.6277 -1.6444 5.7136 19 6 2.4878 -2.1326 5.2676 20 7 1.8622 -1.6018 4.2358 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 1.8762 -2.6151 0.3647 26 1 1.9053 -2.5656 2.1440 27 1 0.4384 -2.0742 1.2639 28 1 1.9298 1.0870 2.3125 29 1 0.5723 -0.0345 2.5726 30 1 4.0009 0.8399 3.5451 31 1 5.1251 -0.2022 5.5022 32 1 2.0522 -2.9873 5.7636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396631350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:12 Heat of formation + Delta-G solvation = 39.362109 kcal Electronic energy + Delta-G solvation = -14891.805736 eV Core-core repulsion = 12466.170585 eV Total energy + Delta-G solvation = -2425.635151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92228 -38.97712 -35.35980 -34.24206 -33.18268 -30.62798 -28.80840 -27.22774 -25.97333 -25.20033 -23.42298 -21.11910 -18.44133 -18.32459 -17.66335 -17.04996 -16.36846 -16.26440 -15.41304 -15.37893 -15.12237 -14.54571 -14.29390 -13.88762 -13.36315 -12.90233 -12.87227 -12.64737 -12.53950 -12.31163 -12.03183 -11.83835 -11.77068 -11.55286 -10.95882 -10.50381 -10.48880 -10.16221 -8.95970 -8.10784 -6.21311 0.01464 0.14220 1.44191 1.44906 1.52656 2.43083 2.79446 3.11563 3.18804 3.34437 3.55576 3.62740 4.11683 4.23173 4.39975 4.55710 4.62105 4.69777 4.75628 4.81891 4.90573 4.95072 5.13190 5.16789 5.50273 5.51960 5.69729 5.77298 6.07978 6.15479 6.41543 6.64772 6.90065 7.17283 7.47467 8.95170 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050470 B = 0.006478 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.654699 B = 4321.283255 C = 4418.744553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.217 3.783 3 H 0.018 0.982 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.534 5.534 13 C 0.047 3.953 14 C 0.098 3.902 15 C 0.176 3.824 16 C -0.210 4.210 17 C 0.148 3.852 18 N -0.540 5.540 19 C 0.282 3.718 20 N -0.539 5.539 21 H 0.064 0.936 22 H 0.027 0.973 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.165 0.835 31 H 0.204 0.796 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -1.799 12.668 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.110 3.890 3 H 0.036 0.964 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.258 5.258 13 C -0.101 4.101 14 C -0.030 4.030 15 C 0.031 3.969 16 C -0.232 4.232 17 C -0.017 4.017 18 N -0.255 5.255 19 C -0.005 4.005 20 N -0.255 5.255 21 H 0.083 0.917 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.183 0.817 31 H 0.220 0.780 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.840 -2.469 12.952 13.733 hybrid contribution -0.525 0.427 -1.436 1.587 sum 3.315 -2.042 11.516 12.156 Atomic orbital electron populations 1.22220 1.00284 0.99157 1.00231 1.19113 0.90069 0.93328 0.86509 0.96418 1.21315 1.30836 1.12519 0.90903 0.92740 1.25636 0.95359 0.95783 1.01659 1.69989 1.37675 1.24006 1.24134 0.85625 0.78730 0.78608 0.78735 1.19944 1.20897 1.19817 1.62306 1.59568 1.02671 1.01295 1.22124 0.97093 0.90163 1.00728 1.21002 0.97056 0.97937 0.87044 1.21670 0.92258 0.89887 0.93115 1.23004 0.96483 1.04150 0.99600 1.23795 0.99016 0.89114 0.89790 1.68459 1.12078 1.12919 1.32045 1.25440 0.87956 0.97858 0.89268 1.68272 1.36390 1.11145 1.09652 0.91747 0.95384 0.95243 0.92889 0.92841 0.92021 0.96466 0.88635 0.93892 0.81740 0.77960 0.76591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.28 71.98 0.60 -7.09 16 2 C 0.22 10.77 2.34 44.17 0.10 10.88 16 3 H 0.02 0.96 8.03 -2.39 -0.02 0.95 16 4 C -0.52 -28.18 7.94 25.60 0.20 -27.98 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.91 11.32 21.45 0.24 -51.67 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.53 -22.75 4.73 -906.01 -4.29 -27.04 16 13 C 0.05 1.95 8.66 127.69 1.11 3.05 16 14 C 0.10 3.47 4.76 85.56 0.41 3.88 16 15 C 0.18 5.48 5.71 42.58 0.24 5.72 16 16 C -0.21 -5.24 9.84 22.44 0.22 -5.02 16 17 C 0.15 3.18 11.30 84.70 0.96 4.14 16 18 N -0.54 -13.38 10.44 -200.05 -2.09 -15.47 16 19 C 0.28 7.20 12.29 180.88 2.22 9.42 16 20 N -0.54 -16.60 8.92 -188.07 -1.68 -18.28 16 21 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 22 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 23 H 0.03 1.39 6.38 -2.38 -0.02 1.37 16 24 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.05 2.35 6.53 -2.38 -0.02 2.33 16 26 H 0.06 2.35 6.15 -2.39 -0.01 2.33 16 27 H 0.02 0.71 6.28 -2.39 -0.01 0.69 16 28 H 0.10 3.15 7.92 -2.39 -0.02 3.13 16 29 H 0.04 1.58 6.94 -2.39 -0.02 1.56 16 30 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.20 2.62 8.06 -2.92 -0.02 2.60 16 32 H 0.22 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -62.08 262.98 1.84 -60.25 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.11 Total: 8.55 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.51 Total: -1.75 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -7.81 Total: -112.46 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -62.08 1.84 -60.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396631350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.610 kcal (2) G-P(sol) polarization free energy of solvation -62.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds