Wall clock time and date at job start Mon Mar 30 2020 03:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46896 * 110.99955 * 183.95614 * 12 2 1 14 14 C 1.46897 * 111.00012 * 59.99745 * 12 2 1 15 15 C 1.50701 * 109.47242 * 190.00433 * 14 12 2 16 16 C 1.38619 * 120.44772 * 94.99337 * 15 14 12 17 17 C 1.38582 * 118.39683 * 180.02562 * 16 15 14 18 18 N 1.32344 * 119.10386 * 0.02562 * 17 16 15 19 19 C 1.31776 * 120.82512 * 0.02562 * 18 17 16 20 20 N 1.31818 * 121.75035 * 359.71611 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08994 * 109.47833 * 59.99499 * 13 12 2 26 26 H 1.09009 * 109.46755 * 180.02562 * 13 12 2 27 27 H 1.09001 * 109.47104 * 299.98879 * 13 12 2 28 28 H 1.09009 * 109.46998 * 310.00024 * 14 12 2 29 29 H 1.09000 * 109.47347 * 70.00169 * 14 12 2 30 30 H 1.07994 * 120.80488 * 0.03469 * 16 15 14 31 31 H 1.08004 * 120.44634 * 180.02562 * 17 16 15 32 32 H 1.07994 * 119.12638 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8579 -0.8909 -3.6160 16 6 0.9026 -1.7593 -4.1207 17 6 1.2326 -2.5350 -5.2207 18 7 2.4408 -2.4221 -5.7488 19 6 3.3242 -1.5862 -5.2414 20 7 3.0440 -0.8292 -4.1993 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 3.8030 -1.3531 -0.3068 26 1 3.8209 -1.3108 -2.0865 27 1 3.9187 0.2052 -1.1592 28 1 0.4721 0.1325 -2.3564 29 1 2.0518 0.9348 -2.5280 30 1 -0.0753 -1.8296 -3.6679 31 1 0.5135 -3.2224 -5.6412 32 1 4.3020 -1.5158 -5.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396631351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:16 Heat of formation + Delta-G solvation = 58.530258 kcal Electronic energy + Delta-G solvation = -14875.604313 eV Core-core repulsion = 12450.800356 eV Total energy + Delta-G solvation = -2424.803958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82468 -37.12412 -33.87112 -32.67504 -31.90102 -29.18773 -27.66287 -24.97222 -24.21468 -23.80732 -21.99586 -19.49897 -17.36122 -16.84104 -16.07458 -15.37427 -15.21887 -14.70625 -14.07046 -13.65560 -13.62210 -13.45381 -12.43990 -12.20998 -11.79804 -11.15547 -11.05677 -10.81832 -10.80124 -10.66767 -10.42117 -10.16505 -10.07896 -9.94432 -9.43162 -9.08887 -8.87207 -8.45708 -7.27718 -6.04650 -4.09035 1.09391 1.21438 3.29071 3.35684 3.39813 3.90538 4.23156 4.29966 4.39778 4.67245 5.12731 5.21094 5.26037 5.31121 5.59258 5.73478 6.06307 6.08264 6.27357 6.47220 6.53401 6.77146 6.83817 6.98074 7.07659 7.17262 7.44857 7.63738 7.79175 8.11766 8.24064 8.26631 8.51781 8.96848 9.56009 11.02329 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.006547 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.927465 B = 4275.617077 C = 4456.440028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.039 3.961 14 C 0.090 3.910 15 C 0.200 3.800 16 C -0.209 4.209 17 C 0.140 3.860 18 N -0.533 5.533 19 C 0.287 3.713 20 N -0.516 5.516 21 H 0.087 0.913 22 H 0.036 0.964 23 H 0.009 0.991 24 H 0.261 0.739 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.015 0.985 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 -3.230 -11.726 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.110 4.110 14 C -0.039 4.039 15 C 0.054 3.946 16 C -0.232 4.232 17 C -0.025 4.025 18 N -0.248 5.248 19 C -0.001 4.001 20 N -0.231 5.231 21 H 0.106 0.894 22 H 0.055 0.945 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.537 -3.508 -11.972 12.487 hybrid contribution -0.175 0.296 1.231 1.278 sum 0.363 -3.212 -10.742 11.218 Atomic orbital electron populations 1.21887 0.97648 0.99761 1.00005 1.19299 0.92366 0.92176 0.85474 0.98104 1.21125 1.31104 1.12366 0.89613 0.91840 1.24922 0.95155 0.95089 0.99020 1.69882 1.36862 1.23006 1.23496 0.86506 0.78482 0.80068 0.82426 1.20751 1.21220 1.19860 1.62214 1.10183 1.52104 1.01058 1.22238 0.88017 0.99531 1.01182 1.21153 1.01701 0.93598 0.87419 1.21892 0.87866 0.91685 0.93198 1.22789 1.02864 0.98688 0.98832 1.23150 0.93066 0.94894 0.91389 1.68346 1.03325 1.20828 1.32297 1.24885 0.98692 0.87381 0.89181 1.68335 1.20723 1.24150 1.09860 0.89444 0.94523 0.97261 0.92929 0.90852 0.93265 0.96628 0.88699 0.93574 0.83474 0.81860 0.79265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.76 37.16 0.33 -2.84 16 2 C 0.21 5.28 2.06 -68.86 -0.14 5.14 16 3 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 4 C -0.50 -13.65 7.93 -34.44 -0.27 -13.92 16 5 H 0.06 1.73 6.39 -52.49 -0.34 1.39 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.53 -11.42 4.61 -237.73 -1.10 -12.52 16 13 C 0.04 0.81 9.01 60.06 0.54 1.35 16 14 C 0.09 1.64 5.14 -4.98 -0.03 1.61 16 15 C 0.20 3.27 5.72 -82.24 -0.47 2.80 16 16 C -0.21 -2.87 9.84 -39.31 -0.39 -3.26 16 17 C 0.14 1.74 11.30 -17.20 -0.19 1.54 16 18 N -0.53 -7.37 10.44 -14.58 -0.15 -7.52 16 19 C 0.29 3.98 12.29 -92.15 -1.13 2.85 16 20 N -0.52 -8.35 8.92 -10.80 -0.10 -8.44 16 21 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.01 0.18 6.20 -51.93 -0.32 -0.15 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 25 H 0.07 1.61 6.23 -51.93 -0.32 1.28 16 26 H 0.05 0.95 6.15 -51.92 -0.32 0.63 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 1.62 5.75 -51.92 -0.30 1.32 16 29 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -29.58 265.32 -7.60 -37.18 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.01 Total: -1.17 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.85 Total: -3.21 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.72 Total: -52.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.58 -7.60 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396631351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.712 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds