Wall clock time and date at job start Mon Mar 30 2020 03:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46896 * 110.99955 * 183.95614 * 12 2 1 14 14 C 1.46897 * 111.00012 * 59.99745 * 12 2 1 15 15 C 1.50701 * 109.47242 * 190.00433 * 14 12 2 16 16 C 1.38619 * 120.44772 * 94.99337 * 15 14 12 17 17 C 1.38582 * 118.39683 * 180.02562 * 16 15 14 18 18 N 1.32344 * 119.10386 * 0.02562 * 17 16 15 19 19 C 1.31776 * 120.82512 * 0.02562 * 18 17 16 20 20 N 1.31818 * 121.75035 * 359.71611 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08994 * 109.47833 * 59.99499 * 13 12 2 26 26 H 1.09009 * 109.46755 * 180.02562 * 13 12 2 27 27 H 1.09001 * 109.47104 * 299.98879 * 13 12 2 28 28 H 1.09009 * 109.46998 * 310.00024 * 14 12 2 29 29 H 1.09000 * 109.47347 * 70.00169 * 14 12 2 30 30 H 1.07994 * 120.80488 * 0.03469 * 16 15 14 31 31 H 1.08004 * 120.44634 * 180.02562 * 17 16 15 32 32 H 1.07994 * 119.12638 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8579 -0.8909 -3.6160 16 6 0.9026 -1.7593 -4.1207 17 6 1.2326 -2.5350 -5.2207 18 7 2.4408 -2.4221 -5.7488 19 6 3.3242 -1.5862 -5.2414 20 7 3.0440 -0.8292 -4.1993 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 3.8030 -1.3531 -0.3068 26 1 3.8209 -1.3108 -2.0865 27 1 3.9187 0.2052 -1.1592 28 1 0.4721 0.1325 -2.3564 29 1 2.0518 0.9348 -2.5280 30 1 -0.0753 -1.8296 -3.6679 31 1 0.5135 -3.2224 -5.6412 32 1 4.3020 -1.5158 -5.6945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396631351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:15 Heat of formation + Delta-G solvation = 39.604803 kcal Electronic energy + Delta-G solvation = -14876.424982 eV Core-core repulsion = 12450.800356 eV Total energy + Delta-G solvation = -2425.624627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.92630 -38.81360 -35.37362 -34.24746 -33.14923 -31.06901 -29.17811 -26.88553 -25.51466 -25.18303 -23.41814 -21.31103 -18.53982 -18.43834 -17.63426 -17.05288 -16.29590 -16.17779 -15.82201 -15.24505 -15.05205 -14.59433 -14.19596 -13.92283 -13.41775 -12.96490 -12.83689 -12.66460 -12.53745 -12.11979 -12.01958 -11.83412 -11.76069 -11.54840 -10.92576 -10.58038 -10.45201 -10.16554 -9.05386 -8.12211 -6.23667 0.00971 0.13962 1.42217 1.43350 1.53744 2.41699 2.78376 3.10619 3.16667 3.34142 3.52797 3.60870 4.10813 4.22810 4.37748 4.52595 4.63417 4.68953 4.72552 4.84533 5.00006 5.03111 5.08266 5.21220 5.49116 5.50937 5.70798 5.76060 6.08514 6.24575 6.31149 6.63050 6.88920 7.16974 7.45197 8.93822 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.006547 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.927465 B = 4275.617077 C = 4456.440028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 H -0.035 1.035 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.533 5.533 13 C 0.049 3.951 14 C 0.094 3.906 15 C 0.176 3.824 16 C -0.209 4.209 17 C 0.149 3.851 18 N -0.540 5.540 19 C 0.283 3.717 20 N -0.541 5.541 21 H 0.061 0.939 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.262 0.738 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.005 0.995 28 H 0.105 0.895 29 H 0.034 0.966 30 H 0.166 0.834 31 H 0.205 0.795 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 -4.610 -12.788 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.109 3.891 3 H -0.017 1.017 4 C -0.559 4.559 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.258 5.258 13 C -0.099 4.099 14 C -0.034 4.034 15 C 0.031 3.969 16 C -0.231 4.231 17 C -0.017 4.017 18 N -0.255 5.255 19 C -0.005 4.005 20 N -0.257 5.257 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.024 0.976 28 H 0.123 0.877 29 H 0.052 0.948 30 H 0.184 0.816 31 H 0.221 0.779 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.203 -4.888 -13.049 13.936 hybrid contribution -0.064 0.718 1.449 1.618 sum 0.140 -4.170 -11.600 12.328 Atomic orbital electron populations 1.21689 0.96514 0.99732 1.00153 1.19113 0.93216 0.90201 0.86524 1.01733 1.21389 1.31256 1.12353 0.90930 0.92499 1.25666 0.95320 0.95763 1.01758 1.70002 1.37599 1.24041 1.24132 0.85544 0.77991 0.79021 0.79001 1.20385 1.20661 1.19457 1.62125 1.10353 1.51963 1.01351 1.22119 0.87857 0.98833 1.01137 1.21108 1.01948 0.93440 0.86894 1.21643 0.89132 0.92886 0.93268 1.22998 1.03052 0.97894 0.99127 1.23808 0.93128 0.94402 0.90340 1.68455 1.03932 1.20714 1.32355 1.25434 0.99845 0.86721 0.88504 1.68270 1.21057 1.25288 1.11038 0.92013 0.94437 0.94390 0.92842 0.92390 0.91687 0.97614 0.87709 0.94750 0.81628 0.77877 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.76 71.98 0.63 -5.12 16 2 C 0.22 10.91 2.06 44.17 0.09 11.00 16 3 H -0.03 -1.97 8.14 -2.39 -0.02 -1.99 16 4 C -0.52 -28.60 7.93 25.60 0.20 -28.40 16 5 H 0.06 3.13 6.39 -2.91 -0.02 3.12 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 8 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.53 -22.99 4.61 -906.04 -4.18 -27.17 16 13 C 0.05 2.07 9.01 127.69 1.15 3.22 16 14 C 0.09 3.39 5.14 85.56 0.44 3.83 16 15 C 0.18 5.51 5.72 42.58 0.24 5.76 16 16 C -0.21 -5.17 9.84 22.44 0.22 -4.95 16 17 C 0.15 3.17 11.30 84.70 0.96 4.12 16 18 N -0.54 -13.35 10.44 -200.05 -2.09 -15.43 16 19 C 0.28 7.24 12.29 180.88 2.22 9.46 16 20 N -0.54 -16.82 8.92 -188.07 -1.68 -18.50 16 21 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.04 1.51 6.20 -2.38 -0.01 1.49 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.06 2.58 6.23 -2.39 -0.01 2.56 16 26 H 0.06 2.51 6.15 -2.38 -0.01 2.49 16 27 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.10 3.47 5.75 -2.38 -0.01 3.45 16 29 H 0.03 1.30 8.12 -2.39 -0.02 1.28 16 30 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.22 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -63.31 265.32 2.04 -61.27 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.11 Total: 6.14 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.61 Total: 0.13 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -7.70 Total: -113.07 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -63.31 2.04 -61.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396631351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.872 kcal (2) G-P(sol) polarization free energy of solvation -63.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds