Wall clock time and date at job start Mon Mar 30 2020 02:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34936 * 125.95385 * 2 1 4 4 N 1.36036 * 106.64164 * 179.97438 * 3 2 1 5 5 C 1.35645 * 107.47616 * 0.09108 * 4 3 2 6 6 N 1.29883 * 108.58640 * 359.87543 * 5 4 3 7 7 C 1.51009 * 123.27609 * 179.61363 * 5 4 3 8 8 N 1.47229 * 108.14144 * 344.54220 * 7 5 4 9 9 C 1.46904 * 111.02743 * 174.13358 * 8 7 5 10 10 C 1.50699 * 109.46831 * 65.66983 * 9 8 7 11 11 H 1.07999 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99894 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99727 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00196 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47002 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47471 * 119.99768 * 14 12 10 17 17 H 1.48504 * 109.47165 * 239.99866 * 14 12 10 18 18 C 1.46981 * 111.27646 * 49.96384 * 8 7 5 19 19 C 1.46524 * 128.66796 * 180.20701 * 4 3 2 20 20 H 1.08997 * 109.46796 * 90.00106 * 1 2 3 21 21 H 1.08998 * 109.46868 * 210.00160 * 1 2 3 22 22 H 1.09000 * 109.46668 * 330.00311 * 1 2 3 23 23 H 1.07996 * 126.67769 * 359.94195 * 3 2 1 24 24 H 1.09011 * 109.73544 * 103.92597 * 7 5 4 25 25 H 1.09000 * 109.74159 * 224.62280 * 7 5 4 26 26 H 1.08999 * 109.47134 * 185.67273 * 9 8 7 27 27 H 1.09001 * 109.46907 * 305.67542 * 9 8 7 28 28 H 0.97005 * 119.99620 * 180.02562 * 13 12 10 29 29 H 1.09005 * 109.44222 * 169.24508 * 18 8 7 30 30 H 1.09000 * 109.44322 * 49.35028 * 18 8 7 31 31 H 1.09005 * 109.70853 * 283.24833 * 19 4 3 32 32 H 1.08994 * 109.71583 * 43.84253 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2993 1.0923 0.0000 4 7 3.5831 0.6424 0.0006 5 6 3.5397 -0.7133 -0.0011 6 7 2.2959 -1.0877 0.0000 7 6 4.7749 -1.5819 -0.0096 8 7 5.9234 -0.7419 -0.3880 9 6 7.1823 -1.4914 -0.2817 10 6 7.1918 -2.6041 -1.2980 11 1 6.3474 -2.7405 -1.9573 12 6 8.2787 -3.4479 -1.3863 13 7 9.3069 -3.2820 -0.5831 14 14 8.2909 -4.8266 -2.6465 15 1 7.0247 -4.7996 -3.4220 16 1 9.4406 -4.6444 -3.5686 17 1 8.4168 -6.1324 -1.9504 18 6 5.9728 0.4875 0.4160 19 6 4.8254 1.4193 0.0050 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9769 2.1230 -0.0009 24 1 4.9398 -1.9971 0.9847 25 1 4.6519 -2.3900 -0.7307 26 1 8.0212 -0.8210 -0.4689 27 1 7.2706 -1.9131 0.7195 28 1 10.0717 -3.8754 -0.6454 29 1 6.9256 0.9907 0.2512 30 1 5.8744 0.2348 1.4717 31 1 5.0140 1.8167 -0.9924 32 1 4.7437 2.2394 0.7181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611801991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:12 Heat of formation + Delta-G solvation = 64.607631 kcal Electronic energy + Delta-G solvation = -14888.914558 eV Core-core repulsion = 12464.374135 eV Total energy + Delta-G solvation = -2424.540423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.94435 -37.24395 -33.98418 -32.49367 -31.41073 -29.28425 -28.00581 -26.32424 -24.12110 -22.86977 -21.29881 -19.84365 -18.65115 -16.82278 -16.23654 -15.84092 -14.85424 -14.54091 -14.00744 -13.90466 -13.51226 -13.31006 -12.90509 -12.50488 -12.13590 -12.05018 -11.67941 -11.48148 -11.19190 -11.06887 -10.71704 -10.63556 -9.96869 -9.62208 -9.30161 -9.21394 -8.51949 -7.90864 -7.49448 -6.10512 -4.12603 2.36310 3.10513 3.29480 3.37264 3.40587 3.43212 4.31572 4.48855 4.77887 4.84631 5.05661 5.25786 5.28711 5.37465 5.47065 5.52562 5.81081 5.83461 5.93882 5.97927 6.12931 6.15600 6.45324 6.65301 7.01453 7.10766 7.14069 7.48084 7.66479 7.82523 7.99768 8.35181 8.49720 8.94863 9.52851 11.00277 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041899 B = 0.006936 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.117310 B = 4036.012995 C = 4540.165422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.013 4.013 3 C -0.064 4.064 4 N -0.452 5.452 5 C 0.228 3.772 6 N -0.492 5.492 7 C 0.150 3.850 8 N -0.539 5.539 9 C 0.195 3.805 10 C -0.513 4.513 11 H 0.066 0.934 12 C 0.058 3.942 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.037 3.963 19 C 0.111 3.889 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.168 0.832 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.037 0.963 27 H -0.003 1.003 28 H 0.262 0.738 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 9.611 2.477 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 C -0.198 4.198 4 N -0.134 5.134 5 C -0.036 4.036 6 N -0.212 5.212 7 C 0.020 3.980 8 N -0.265 5.265 9 C 0.071 3.929 10 C -0.551 4.551 11 H 0.084 0.916 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.092 4.092 19 C -0.012 4.012 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.186 0.814 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.055 0.945 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.295 8.983 2.033 13.814 hybrid contribution 0.578 0.037 0.177 0.606 sum -9.717 9.021 2.210 13.441 Atomic orbital electron populations 1.19936 0.88102 1.02057 1.01722 1.20771 0.96212 0.88476 1.08773 1.22131 0.83281 0.99996 1.14372 1.45343 1.06287 1.07878 1.53917 1.23667 0.94976 0.81664 1.03280 1.69837 0.99824 1.30264 1.21295 1.20570 0.82793 0.93370 1.01230 1.62222 1.05663 1.05812 1.52786 1.19802 0.83896 0.92812 0.96378 1.21171 1.03332 1.12337 1.18273 0.91588 1.24975 0.95359 0.97886 0.96177 1.69961 1.06883 1.38734 1.38128 0.86413 0.78163 0.81577 0.81165 1.19505 1.20983 1.20979 1.22385 0.97601 0.93363 0.95876 1.22146 0.81644 0.94251 1.03140 0.91853 0.91505 0.91866 0.81446 0.92788 0.86939 0.94536 0.98498 0.92842 0.88681 0.94566 0.89353 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.42 36.01 0.38 -0.35 16 2 C -0.01 -0.21 7.10 -82.65 -0.59 -0.80 16 3 C -0.06 -0.96 11.59 -16.86 -0.20 -1.15 16 4 N -0.45 -7.53 3.14 -113.69 -0.36 -7.89 16 5 C 0.23 4.44 7.76 -155.22 -1.20 3.24 16 6 N -0.49 -9.74 11.24 -6.85 -0.08 -9.82 16 7 C 0.15 3.08 5.54 -4.64 -0.03 3.05 16 8 N -0.54 -11.25 4.64 -236.69 -1.10 -12.35 16 9 C 0.20 4.84 4.72 -4.97 -0.02 4.81 16 10 C -0.51 -13.99 8.60 -34.44 -0.30 -14.28 16 11 H 0.07 1.81 7.09 -52.49 -0.37 1.44 16 12 C 0.06 1.60 5.46 -17.81 -0.10 1.50 16 13 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.04 0.61 5.55 -3.56 -0.02 0.59 16 19 C 0.11 1.53 7.25 -3.81 -0.03 1.51 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 24 H 0.05 1.11 8.08 -51.92 -0.42 0.69 16 25 H 0.11 2.47 7.06 -51.93 -0.37 2.11 16 26 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 27 H 0.00 -0.07 8.08 -51.93 -0.42 -0.49 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 29 H 0.09 1.43 7.83 -51.93 -0.41 1.03 16 30 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -31.16 268.34 -8.36 -39.52 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.48 Total: -2.78 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.10 Total: -1.89 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.80 Total: -55.25 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.16 -8.36 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611801991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.127 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds