Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34128 * 125.99192 * 2 1 4 4 C 1.30502 * 109.25863 * 180.25023 * 3 2 1 5 5 N 1.35045 * 108.69856 * 359.75170 * 4 3 2 6 6 H 0.96993 * 126.39575 * 179.97438 * 5 4 3 7 7 C 1.34668 * 125.99189 * 179.82262 * 2 1 3 8 8 C 1.50700 * 126.58893 * 0.02772 * 7 2 1 9 9 N 1.46498 * 109.47368 * 79.71053 * 8 7 2 10 10 C 1.36935 * 120.00276 * 89.99785 * 9 8 7 11 11 H 1.07996 * 120.00015 * 219.19055 * 10 9 8 12 12 C 1.38815 * 119.99700 * 39.19647 * 10 9 8 13 13 N 1.31613 * 120.00268 * 19.38250 * 12 10 9 14 14 Si 1.86806 * 119.99768 * 199.38843 * 12 10 9 15 15 H 1.48500 * 109.46938 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46968 * 299.99588 * 14 12 10 17 17 H 1.48498 * 109.47305 * 59.99581 * 14 12 10 18 18 C 1.46505 * 119.99868 * 269.99766 * 9 8 7 19 19 C 1.52994 * 117.49722 * 192.07723 * 18 9 8 20 20 C 1.53003 * 117.49664 * 123.41777 * 18 9 8 21 21 H 1.09004 * 109.47400 * 270.17833 * 1 2 3 22 22 H 1.08998 * 109.47431 * 30.17701 * 1 2 3 23 23 H 1.09006 * 109.47404 * 150.17753 * 1 2 3 24 24 H 1.07994 * 125.64889 * 179.73770 * 4 3 2 25 25 H 1.08999 * 109.47119 * 319.70740 * 8 7 2 26 26 H 1.09005 * 109.47253 * 199.70730 * 8 7 2 27 27 H 0.97004 * 120.00133 * 174.91959 * 13 12 10 28 28 H 1.08997 * 115.54918 * 337.75485 * 18 9 8 29 29 H 1.08995 * 117.50178 * 0.02562 * 19 18 9 30 30 H 1.09007 * 117.49403 * 145.02296 * 19 18 9 31 31 H 1.08999 * 117.50007 * 214.98135 * 20 18 9 32 32 H 1.08997 * 117.49884 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0054 5 7 3.5912 -0.6402 -0.0035 6 1 4.3912 -1.1886 -0.0068 7 6 2.2983 -1.0896 0.0034 8 6 1.8472 -2.5275 0.0072 9 7 1.4661 -2.9234 -1.3508 10 6 2.4014 -3.4583 -2.1959 11 1 2.3999 -3.1904 -3.2421 12 6 3.3513 -4.3451 -1.7079 13 7 3.1464 -4.9664 -0.5659 14 14 4.9208 -4.6565 -2.6720 15 1 5.7642 -5.6365 -1.9416 16 1 4.5794 -5.1981 -4.0119 17 1 5.6667 -3.3820 -2.8286 18 6 0.0844 -2.7471 -1.8046 19 6 -0.3219 -3.4287 -3.1127 20 6 -0.1439 -1.9091 -3.0643 21 1 -0.3634 0.0032 1.0277 22 1 -0.3634 0.8884 -0.5166 23 1 -0.3634 -0.8916 -0.5111 24 1 4.4003 1.3687 -0.0107 25 1 0.9903 -2.6376 0.6718 26 1 2.6614 -3.1628 0.3559 27 1 3.7739 -5.6403 -0.2609 28 1 -0.6652 -2.6844 -1.0158 29 1 0.4387 -4.0086 -3.6354 30 1 -1.3390 -3.8142 -3.1846 31 1 -1.0439 -1.2955 -3.1043 32 1 0.7338 -1.4887 -3.5550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685973040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = 99.314963 kcal Electronic energy + Delta-G solvation = -15476.139583 eV Core-core repulsion = 13053.104183 eV Total energy + Delta-G solvation = -2423.035400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25458 -37.06511 -33.67918 -32.33385 -31.51011 -29.66340 -26.84823 -25.07040 -23.25353 -21.35570 -20.90123 -19.95180 -18.85833 -17.20777 -16.18203 -15.45217 -14.68823 -14.31883 -14.12678 -13.62368 -12.95496 -12.62812 -12.17637 -12.10757 -11.93633 -11.46406 -11.26294 -10.94364 -10.74835 -10.62011 -10.58796 -10.16208 -9.66589 -9.33648 -9.22266 -9.10010 -8.58572 -7.41468 -6.59032 -5.98494 -3.55859 2.84865 3.21546 3.28615 3.30914 3.78931 3.94514 4.30187 4.92680 5.17870 5.23023 5.28481 5.78193 5.87070 5.99050 6.00392 6.17988 6.27321 6.27908 6.38360 6.50847 6.56032 6.64174 6.70739 6.97690 7.02945 7.16737 7.37688 7.57646 7.68621 8.14353 8.37613 8.78830 9.00448 9.61449 10.20590 11.02586 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.013218 C = 0.009713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.481857 B = 2117.769002 C = 2882.111356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.023 4.023 3 N -0.499 5.499 4 C 0.149 3.851 5 N -0.559 5.559 6 H 0.415 0.585 7 C 0.008 3.992 8 C 0.209 3.791 9 N -0.539 5.539 10 C -0.258 4.258 11 H 0.060 0.940 12 C 0.016 3.984 13 N -0.888 5.888 14 Si 0.898 3.102 15 H -0.288 1.288 16 H -0.278 1.278 17 H -0.283 1.283 18 C 0.129 3.871 19 C -0.195 4.195 20 C -0.222 4.222 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.194 0.806 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.259 0.741 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 4.849 1.300 5.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 N -0.220 5.220 4 C -0.134 4.134 5 N -0.162 5.162 6 H 0.252 0.748 7 C -0.111 4.111 8 C 0.081 3.919 9 N -0.255 5.255 10 C -0.388 4.388 11 H 0.078 0.922 12 C -0.185 4.185 13 N -0.530 5.530 14 Si 0.727 3.273 15 H -0.214 1.214 16 H -0.204 1.204 17 H -0.209 1.209 18 C 0.020 3.980 19 C -0.234 4.234 20 C -0.263 4.263 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.211 0.789 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.471 5.555 1.458 5.929 hybrid contribution 1.752 -1.119 -0.740 2.207 sum 0.281 4.436 0.718 4.503 Atomic orbital electron populations 1.20059 0.88744 1.02584 1.00817 1.20293 0.95939 0.88153 1.10773 1.69991 1.00608 1.31401 1.19978 1.24557 0.96975 0.82624 1.09235 1.43275 1.08841 1.08036 1.56004 0.74780 1.22926 0.82785 0.99959 1.05445 1.19468 1.00378 0.85293 0.86725 1.43266 1.02737 1.67895 1.11565 1.18905 1.06929 1.20567 0.92368 0.92204 1.25255 1.00194 0.95798 0.97222 1.69867 1.36701 1.24472 1.21949 0.86449 0.83280 0.77713 0.79874 1.21393 1.20422 1.20927 1.21134 0.87909 1.00377 0.88572 1.23104 1.00692 0.94836 1.04755 1.23347 1.01494 0.93205 1.08264 0.92885 0.92442 0.90576 0.78907 0.92779 0.88086 0.93052 0.89142 0.88396 0.90693 0.90790 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.12 10.22 36.00 0.37 -0.76 16 2 C -0.02 -0.47 7.09 -82.86 -0.59 -1.06 16 3 N -0.50 -10.09 11.25 -10.88 -0.12 -10.21 16 4 C 0.15 2.61 13.04 -90.37 -1.18 1.43 16 5 N -0.56 -10.35 6.15 -10.30 -0.06 -10.41 16 6 H 0.42 6.96 8.96 -40.82 -0.37 6.59 16 7 C 0.01 0.18 6.82 -81.60 -0.56 -0.38 16 8 C 0.21 4.64 5.44 -5.19 -0.03 4.61 16 9 N -0.54 -12.67 2.75 -167.02 -0.46 -13.13 16 10 C -0.26 -6.62 8.05 -15.06 -0.12 -6.75 16 11 H 0.06 1.59 7.36 -52.49 -0.39 1.21 16 12 C 0.02 0.41 4.99 -17.43 -0.09 0.32 16 13 N -0.89 -23.64 11.45 55.49 0.64 -23.00 16 14 Si 0.90 20.35 29.60 -169.99 -5.03 15.32 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 C 0.13 2.67 4.86 -67.93 -0.33 2.34 16 19 C -0.20 -3.84 9.81 -26.70 -0.26 -4.10 16 20 C -0.22 -4.29 10.01 -26.69 -0.27 -4.55 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.08 1.32 4.51 -51.93 -0.23 1.09 16 24 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 25 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 26 H 0.10 2.47 5.56 -51.93 -0.29 2.18 16 27 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 28 H 0.09 1.71 7.08 -51.93 -0.37 1.35 16 29 H 0.10 2.14 6.90 -51.93 -0.36 1.78 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 268.36 15.07 4.04 4.04 Total: -1.00 -28.90 268.36 -8.14 -37.04 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.09 Total: 9.24 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.05 Total: -8.89 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.01 Total: -56.75 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.90 -8.14 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685973040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.355 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds