Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32162 * 119.99902 * 2 1 4 4 C 1.32113 * 119.99904 * 180.27223 * 3 2 1 5 5 C 1.38394 * 120.00027 * 359.73563 * 4 3 2 6 6 N 1.32123 * 119.99410 * 359.97438 * 5 4 3 7 7 C 1.32153 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99754 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46577 * 89.99970 * 8 7 6 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.46861 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00407 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99616 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00170 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46962 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47149 * 119.99774 * 16 14 12 19 19 H 1.48492 * 109.47160 * 239.99930 * 16 14 12 20 20 H 1.08992 * 109.47411 * 270.24775 * 1 2 3 21 21 H 1.09006 * 109.46935 * 30.24756 * 1 2 3 22 22 H 1.09000 * 109.47132 * 150.24306 * 1 2 3 23 23 H 1.08001 * 120.00474 * 179.71616 * 4 3 2 24 24 H 1.08003 * 120.00226 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47318 * 209.99478 * 8 7 6 26 26 H 1.09000 * 109.47161 * 330.00108 * 8 7 6 27 27 H 1.00898 * 110.99915 * 56.05080 * 9 8 7 28 28 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 29 29 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 30 30 H 1.09002 * 109.47089 * 300.00010 * 11 10 9 31 31 H 1.09001 * 109.47170 * 60.00230 * 11 10 9 32 32 H 0.96997 * 120.00192 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4889 1.1446 -0.0054 5 6 4.1809 -0.0539 -0.0056 6 7 3.5202 -1.1981 0.0002 7 6 2.1987 -1.1980 0.0056 8 6 1.4451 -2.5031 0.0117 9 7 1.2061 -2.9240 1.3986 10 6 0.4714 -4.1953 1.4438 11 6 0.2412 -4.5999 2.9013 12 6 -0.5119 -5.9043 2.9475 13 1 -0.7981 -6.3955 2.0292 14 6 -0.8365 -6.4704 4.1622 15 7 -0.4884 -5.8720 5.2804 16 14 -1.7693 -8.0877 4.2196 17 1 -2.0402 -8.5522 2.8354 18 1 -0.9546 -9.1040 4.9328 19 1 -3.0552 -7.8923 4.9361 20 1 -0.3634 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5177 22 1 -0.3633 -0.8922 -0.5101 23 1 4.0290 2.0798 -0.0101 24 1 5.2609 -0.0540 -0.0105 25 1 0.4906 -2.3739 -0.4985 26 1 2.0321 -3.2639 -0.5029 27 1 0.7193 -2.2069 1.9153 28 1 -0.4899 -4.0774 0.9437 29 1 1.0512 -4.9681 0.9391 30 1 1.2023 -4.7177 3.4018 31 1 -0.3388 -3.8270 3.4056 32 1 -0.7163 -6.2702 6.1349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700004472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 36.297667 kcal Electronic energy + Delta-G solvation = -14199.999090 eV Core-core repulsion = 11774.231055 eV Total energy + Delta-G solvation = -2425.768035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20118 -36.35772 -34.53434 -33.59880 -32.36307 -29.55688 -28.16394 -26.26255 -23.83216 -23.02614 -22.01994 -20.60087 -17.89130 -16.54141 -16.33991 -15.71153 -15.34624 -14.87421 -14.45406 -13.87664 -13.67862 -13.01240 -12.87948 -12.79647 -12.17802 -12.01992 -11.84769 -11.51527 -11.08071 -11.03570 -10.94746 -10.54176 -10.02862 -9.51029 -9.20914 -9.08386 -8.99784 -8.36407 -7.89898 -6.00371 -4.03147 0.70866 1.11627 3.31242 3.38646 3.42450 3.59507 3.96185 4.10912 4.39974 4.44680 4.63425 4.91244 5.04494 5.17043 5.27903 5.35868 5.37793 5.47709 5.70877 5.79988 5.91404 6.28282 6.34070 6.35465 6.93585 7.26611 7.38417 7.68311 7.75300 7.80135 7.89803 8.06115 8.41567 9.04323 9.60827 11.11165 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057469 B = 0.004737 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.100740 B = 5909.081930 C = 6012.394049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.082 3.918 3 N -0.442 5.442 4 C 0.044 3.956 5 C 0.042 3.958 6 N -0.419 5.419 7 C 0.095 3.905 8 C 0.105 3.895 9 N -0.681 5.681 10 C 0.067 3.933 11 C 0.025 3.975 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.167 0.833 24 H 0.168 0.832 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.335 0.665 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.014 0.986 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 12.640 -11.489 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.059 4.059 3 N -0.157 5.157 4 C -0.117 4.117 5 C -0.118 4.118 6 N -0.133 5.133 7 C -0.046 4.046 8 C -0.025 4.025 9 N -0.312 5.312 10 C -0.061 4.061 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.104 0.896 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.184 0.816 24 H 0.185 0.815 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.153 0.847 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.417 12.298 -11.239 17.518 hybrid contribution -1.146 -0.466 -0.034 1.238 sum 4.271 11.832 -11.273 16.891 Atomic orbital electron populations 1.20819 0.87838 1.03924 1.03979 1.22137 0.98408 0.89120 0.96220 1.68265 1.09002 1.29175 1.09259 1.23713 0.90843 0.99816 0.97289 1.23782 1.01894 0.88828 0.97264 1.68310 1.08319 1.29527 1.07164 1.22111 0.90640 0.96234 0.95611 1.20844 0.97141 0.91630 0.92871 1.60605 1.54219 1.06685 1.09719 1.22216 0.93745 0.88436 1.01692 1.19079 0.97377 0.95919 0.88910 1.21200 1.35966 1.06525 0.92323 0.92612 1.25007 0.96056 0.97573 0.95724 1.69981 1.46778 1.39128 0.97344 0.86524 0.79574 0.83753 0.78070 1.19734 1.20969 1.21041 0.89556 0.90211 0.89866 0.81579 0.81511 0.93210 0.89251 0.84741 0.96286 0.91948 0.95579 0.96783 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.79 36.01 0.35 -0.80 16 2 C 0.08 1.09 6.78 -82.41 -0.56 0.53 16 3 N -0.44 -5.78 10.42 -9.29 -0.10 -5.87 16 4 C 0.04 0.47 11.23 -17.37 -0.20 0.27 16 5 C 0.04 0.48 11.23 -17.37 -0.19 0.29 16 6 N -0.42 -6.22 10.42 -9.29 -0.10 -6.32 16 7 C 0.10 1.39 6.30 -82.42 -0.52 0.87 16 8 C 0.11 1.56 5.59 -4.97 -0.03 1.53 16 9 N -0.68 -12.28 6.49 -115.05 -0.75 -13.02 16 10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 11 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 12 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.08 0.81 5.95 -51.93 -0.31 0.50 16 23 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 24 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 25 H 0.05 0.64 5.94 -51.93 -0.31 0.33 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.34 5.83 8.72 -39.29 -0.34 5.49 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -32.47 277.59 -7.07 -39.55 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.31 Total: 0.10 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.72 Total: -8.94 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.20 Total: -51.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.47 -7.07 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700004472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.843 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds