Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32162 * 119.99902 * 2 1 4 4 C 1.32113 * 119.99904 * 180.27223 * 3 2 1 5 5 C 1.38394 * 120.00027 * 359.73563 * 4 3 2 6 6 N 1.32123 * 119.99410 * 359.97438 * 5 4 3 7 7 C 1.32153 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99754 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46577 * 89.99970 * 8 7 6 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.46861 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00407 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99616 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00170 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46962 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47149 * 119.99774 * 16 14 12 19 19 H 1.48492 * 109.47160 * 239.99930 * 16 14 12 20 20 H 1.08992 * 109.47411 * 270.24775 * 1 2 3 21 21 H 1.09006 * 109.46935 * 30.24756 * 1 2 3 22 22 H 1.09000 * 109.47132 * 150.24306 * 1 2 3 23 23 H 1.08001 * 120.00474 * 179.71616 * 4 3 2 24 24 H 1.08003 * 120.00226 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47318 * 209.99478 * 8 7 6 26 26 H 1.09000 * 109.47161 * 330.00108 * 8 7 6 27 27 H 1.00898 * 110.99915 * 56.05080 * 9 8 7 28 28 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 29 29 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 30 30 H 1.09002 * 109.47089 * 300.00010 * 11 10 9 31 31 H 1.09001 * 109.47170 * 60.00230 * 11 10 9 32 32 H 0.96997 * 120.00192 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4889 1.1446 -0.0054 5 6 4.1809 -0.0539 -0.0056 6 7 3.5202 -1.1981 0.0002 7 6 2.1987 -1.1980 0.0056 8 6 1.4451 -2.5031 0.0117 9 7 1.2061 -2.9240 1.3986 10 6 0.4714 -4.1953 1.4438 11 6 0.2412 -4.5999 2.9013 12 6 -0.5119 -5.9043 2.9475 13 1 -0.7981 -6.3955 2.0292 14 6 -0.8365 -6.4704 4.1622 15 7 -0.4884 -5.8720 5.2804 16 14 -1.7693 -8.0877 4.2196 17 1 -2.0402 -8.5522 2.8354 18 1 -0.9546 -9.1040 4.9328 19 1 -3.0552 -7.8923 4.9361 20 1 -0.3634 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5177 22 1 -0.3633 -0.8922 -0.5101 23 1 4.0290 2.0798 -0.0101 24 1 5.2609 -0.0540 -0.0105 25 1 0.4906 -2.3739 -0.4985 26 1 2.0321 -3.2639 -0.5029 27 1 0.7193 -2.2069 1.9153 28 1 -0.4899 -4.0774 0.9437 29 1 1.0512 -4.9681 0.9391 30 1 1.2023 -4.7177 3.4018 31 1 -0.3388 -3.8270 3.4056 32 1 -0.7163 -6.2702 6.1349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700004472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 12.220299 kcal Electronic energy + Delta-G solvation = -14201.043163 eV Core-core repulsion = 11774.231055 eV Total energy + Delta-G solvation = -2426.812108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.14842 -37.78273 -35.53049 -35.30361 -33.88699 -31.25849 -29.12653 -27.68350 -25.58019 -24.00990 -23.10774 -22.46893 -18.86957 -18.51584 -17.50040 -16.84824 -16.44658 -16.40615 -16.10032 -15.19340 -14.92130 -14.40055 -14.13064 -13.87890 -13.68880 -13.41075 -13.03332 -12.86883 -12.79254 -12.49482 -12.40700 -12.05957 -11.91156 -11.43999 -11.27515 -10.56578 -10.06080 -10.00349 -9.32269 -8.19656 -6.31135 -0.21760 0.15709 1.41937 1.42552 1.55847 2.41301 2.63801 3.07360 3.14391 3.20058 3.43749 3.56374 3.78472 4.12093 4.31178 4.36021 4.46398 4.53628 4.58526 4.66158 4.74057 4.84754 5.06406 5.07841 5.44508 5.46957 5.65858 5.77510 6.08369 6.22469 6.35866 6.44091 6.85212 6.86662 7.38499 8.92965 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057469 B = 0.004737 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.100740 B = 5909.081930 C = 6012.394049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.075 3.925 3 N -0.461 5.461 4 C 0.053 3.947 5 C 0.039 3.961 6 N -0.453 5.453 7 C 0.071 3.929 8 C 0.111 3.889 9 N -0.692 5.692 10 C 0.086 3.914 11 C 0.030 3.970 12 C -0.542 4.542 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.259 1.259 18 H -0.280 1.280 19 H -0.278 1.278 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.208 0.792 24 H 0.201 0.799 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.338 0.662 28 H 0.033 0.967 29 H 0.060 0.940 30 H -0.010 1.010 31 H -0.007 1.007 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 13.016 -12.662 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.065 4.065 3 N -0.177 5.177 4 C -0.107 4.107 5 C -0.121 4.121 6 N -0.168 5.168 7 C -0.069 4.069 8 C -0.018 4.018 9 N -0.324 5.324 10 C -0.043 4.043 11 C -0.007 4.007 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.183 1.183 18 H -0.206 1.206 19 H -0.203 1.203 20 H 0.104 0.896 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.224 0.776 24 H 0.218 0.782 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.155 0.845 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.008 0.992 31 H 0.011 0.989 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.270 12.674 -12.434 18.521 hybrid contribution -0.983 -0.456 0.326 1.132 sum 4.287 12.218 -12.108 17.728 Atomic orbital electron populations 1.20869 0.86485 1.04884 1.04175 1.22387 0.99445 0.88814 0.95836 1.68354 1.10235 1.29021 1.10044 1.24408 0.90280 1.01290 0.94744 1.24390 1.03470 0.88146 0.96132 1.68250 1.08797 1.31583 1.08150 1.21998 0.90890 0.96258 0.97724 1.20795 0.98300 0.91966 0.90774 1.60452 1.53755 1.05876 1.12275 1.21816 0.94765 0.89820 0.97855 1.18932 0.94804 0.95013 0.91961 1.21648 1.36094 1.07434 0.92851 0.91769 1.25991 0.96975 1.01582 0.95259 1.70120 1.48084 1.41121 0.98087 0.85352 0.78035 0.78688 0.78676 1.18327 1.20581 1.20326 0.89632 0.89067 0.89073 0.77572 0.78187 0.90892 0.89986 0.84479 0.94894 0.92130 0.99204 0.98874 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 9.79 71.24 0.70 -1.44 16 2 C 0.07 1.90 6.78 42.53 0.29 2.19 16 3 N -0.46 -11.24 10.42 -183.30 -1.91 -13.15 16 4 C 0.05 1.01 11.23 84.69 0.95 1.96 16 5 C 0.04 0.81 11.23 84.69 0.95 1.76 16 6 N -0.45 -13.07 10.42 -183.29 -1.91 -14.98 16 7 C 0.07 2.03 6.30 42.54 0.27 2.30 16 8 C 0.11 3.23 5.59 85.56 0.48 3.71 16 9 N -0.69 -25.06 6.49 -517.90 -3.36 -28.42 16 10 C 0.09 3.56 5.62 86.30 0.49 4.04 16 11 C 0.03 1.63 5.23 29.85 0.16 1.79 16 12 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 15 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 16 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.09 1.63 5.95 -2.39 -0.01 1.62 16 23 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 24 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 25 H 0.07 1.76 5.94 -2.39 -0.01 1.75 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.34 11.87 8.72 -89.70 -0.78 11.09 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -70.52 277.59 0.43 -70.08 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.33 Total: 11.28 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.97 Total: -13.87 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -6.90 Total: -113.74 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.52 0.43 -70.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700004472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.304 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds