Wall clock time and date at job start Mon Mar 30 2020 03:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 H 1.08004 * 119.99635 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47036 * 89.99826 * 9 7 5 11 11 H 1.48495 * 109.47049 * 209.99969 * 9 7 5 12 12 H 1.48501 * 109.46661 * 329.99884 * 9 7 5 13 13 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 14 14 C 1.46901 * 110.99793 * 85.00144 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 N 1.31789 * 119.12361 * 269.72615 * 15 14 13 17 17 C 1.32334 * 120.81756 * 179.75972 * 16 15 14 18 18 C 1.38598 * 119.10357 * 0.50506 * 17 16 15 19 19 C 1.38596 * 118.40103 * 359.75408 * 18 17 16 20 20 N 1.31798 * 119.12090 * 90.00105 * 15 14 13 21 21 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 23 23 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 24 24 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 25 25 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 26 26 H 0.97002 * 119.99748 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99995 * 208.95221 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.08003 * 120.44910 * 180.23407 * 17 16 15 31 31 H 1.07999 * 120.79862 * 179.76731 * 18 17 16 32 32 H 1.07999 * 120.44851 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1935 2.3577 8 7 3.5765 -1.8386 3.2989 9 14 6.0921 -1.0612 2.4367 10 1 6.4699 0.1610 3.1909 11 1 6.6447 -2.2567 3.1226 12 1 6.6416 -0.9825 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5558 16 7 3.8845 -0.5553 -3.7921 17 6 4.3657 -1.2028 -4.8411 18 6 3.4860 -1.8411 -5.7011 19 6 2.1298 -1.7790 -5.4223 20 7 1.7225 -1.1167 -4.3515 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.0610 -2.2459 4.0339 27 1 2.9172 -1.1205 -1.0288 28 1 2.7588 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5525 30 1 5.4293 -1.2298 -5.0270 31 1 3.8486 -2.3743 -6.5674 32 1 1.4151 -2.2648 -6.0700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705398206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:59 Heat of formation + Delta-G solvation = 38.279423 kcal Electronic energy + Delta-G solvation = -14506.003005 eV Core-core repulsion = 12080.320905 eV Total energy + Delta-G solvation = -2425.682100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89163 -36.65054 -33.61102 -33.28712 -32.18123 -29.93248 -27.35434 -25.71715 -24.46861 -23.06435 -21.92645 -19.43472 -17.45551 -16.92705 -16.30927 -15.41279 -15.14761 -14.79929 -14.35484 -13.88636 -13.57923 -13.33589 -12.62186 -12.04486 -11.76516 -11.54107 -11.20389 -11.15348 -10.75850 -10.71131 -10.56324 -10.50951 -10.19224 -9.55864 -9.19797 -9.12744 -9.03479 -8.36617 -7.68345 -5.99719 -4.02570 0.93226 1.16551 3.32668 3.39041 3.43251 3.78691 4.06103 4.24344 4.46714 4.59691 4.97991 5.10480 5.11430 5.38143 5.44455 5.62346 5.89872 5.95532 6.07003 6.24211 6.34134 6.44608 6.56366 6.95758 6.97455 7.08154 7.50016 7.66636 7.98848 8.03224 8.19627 8.26477 8.39890 9.03656 9.61729 11.11173 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.007534 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.625625 B = 3715.503521 C = 4533.017630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.033 0.967 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.124 3.876 15 C 0.335 3.665 16 N -0.513 5.513 17 C 0.147 3.853 18 C -0.240 4.240 19 C 0.145 3.855 20 N -0.503 5.503 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.358 0.642 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 1.333 -16.270 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 H 0.051 0.949 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.007 4.007 15 C 0.067 3.933 16 N -0.227 5.227 17 C -0.019 4.019 18 C -0.263 4.263 19 C -0.022 4.022 20 N -0.217 5.217 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.179 0.821 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.169 1.490 -15.457 15.679 hybrid contribution 2.265 -0.063 -0.524 2.325 sum 0.095 1.428 -15.980 16.044 Atomic orbital electron populations 1.21799 0.96448 1.01496 0.99605 1.21653 0.93522 0.95999 0.90812 0.94904 1.19289 0.95470 0.96233 0.90711 1.21201 0.92216 1.34450 1.08349 0.92858 1.24980 0.98243 0.95159 0.95708 1.69962 1.35498 1.35622 1.11993 0.86638 0.85968 0.77484 0.78222 1.20711 1.21259 1.19798 1.60599 1.35004 1.31420 1.03854 1.20684 1.00442 0.93014 0.86583 1.23331 0.84716 0.90913 0.94319 1.68334 1.16380 1.18705 1.19289 1.23236 1.00895 0.89405 0.88399 1.22864 0.96113 1.04105 1.03177 1.23249 0.94369 0.92009 0.92571 1.68309 1.40262 1.08727 1.04392 0.92577 0.93191 0.94295 0.95802 0.95582 0.92986 0.82122 0.92954 0.89219 0.81742 0.83832 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.41 37.16 0.35 -2.14 16 2 C 0.09 1.90 2.59 -67.71 -0.18 1.72 16 3 H 0.03 0.70 7.80 -51.93 -0.40 0.30 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.67 8.12 -34.44 -0.28 -14.95 16 6 H 0.05 1.47 7.49 -52.48 -0.39 1.07 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.80 6.30 -107.99 -0.68 -14.48 16 14 C 0.12 2.18 5.92 -4.97 -0.03 2.15 16 15 C 0.33 5.68 7.15 -157.20 -1.12 4.56 16 16 N -0.51 -8.40 10.33 -10.72 -0.11 -8.51 16 17 C 0.15 1.81 11.30 -17.20 -0.19 1.62 16 18 C -0.24 -2.45 10.17 -39.32 -0.40 -2.85 16 19 C 0.14 1.70 11.31 -17.20 -0.19 1.50 16 20 N -0.50 -7.90 10.33 -10.73 -0.11 -8.01 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.63 7.45 -51.93 -0.39 0.25 16 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.36 8.13 7.20 -39.29 -0.28 7.85 16 28 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 29 H 0.09 1.47 7.44 -51.93 -0.39 1.08 16 30 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 277.61 15.07 4.18 4.18 Total: -1.00 -31.85 277.61 -7.64 -39.49 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.37 Total: 2.96 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.27 Total: -6.35 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.17 Total: -57.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.85 -7.64 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705398206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.773 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds