Wall clock time and date at job start Mon Mar 30 2020 03:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 H 1.08004 * 119.99635 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47036 * 89.99826 * 9 7 5 11 11 H 1.48495 * 109.47049 * 209.99969 * 9 7 5 12 12 H 1.48501 * 109.46661 * 329.99884 * 9 7 5 13 13 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 14 14 C 1.46901 * 110.99793 * 85.00144 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 N 1.31789 * 119.12361 * 269.72615 * 15 14 13 17 17 C 1.32334 * 120.81756 * 179.75972 * 16 15 14 18 18 C 1.38598 * 119.10357 * 0.50506 * 17 16 15 19 19 C 1.38596 * 118.40103 * 359.75408 * 18 17 16 20 20 N 1.31798 * 119.12090 * 90.00105 * 15 14 13 21 21 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 23 23 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 24 24 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 25 25 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 26 26 H 0.97002 * 119.99748 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99995 * 208.95221 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.08003 * 120.44910 * 180.23407 * 17 16 15 31 31 H 1.07999 * 120.79862 * 179.76731 * 18 17 16 32 32 H 1.07999 * 120.44851 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1935 2.3577 8 7 3.5765 -1.8386 3.2989 9 14 6.0921 -1.0612 2.4367 10 1 6.4699 0.1610 3.1909 11 1 6.6447 -2.2567 3.1226 12 1 6.6416 -0.9825 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5558 16 7 3.8845 -0.5553 -3.7921 17 6 4.3657 -1.2028 -4.8411 18 6 3.4860 -1.8411 -5.7011 19 6 2.1298 -1.7790 -5.4223 20 7 1.7225 -1.1167 -4.3515 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.0610 -2.2459 4.0339 27 1 2.9172 -1.1205 -1.0288 28 1 2.7588 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5525 30 1 5.4293 -1.2298 -5.0270 31 1 3.8486 -2.3743 -6.5674 32 1 1.4151 -2.2648 -6.0700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705398206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:58 Heat of formation + Delta-G solvation = 15.654959 kcal Electronic energy + Delta-G solvation = -14506.984075 eV Core-core repulsion = 12080.320905 eV Total energy + Delta-G solvation = -2426.663170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91337 -38.30756 -35.07032 -34.64283 -33.76022 -31.38163 -29.28845 -27.07796 -25.42431 -25.01557 -23.17485 -21.18107 -18.56936 -18.46835 -17.94352 -16.76392 -16.57205 -16.21622 -15.95825 -15.26078 -14.89199 -14.45296 -14.21725 -13.59264 -13.54523 -13.27409 -13.18587 -12.64635 -12.56495 -12.39409 -12.07659 -11.83104 -11.71301 -11.27183 -11.04655 -10.59143 -10.45877 -10.16855 -9.29575 -8.20268 -6.30560 -0.05995 0.22578 1.38215 1.38959 1.50324 2.39677 2.70399 2.98805 3.12133 3.29628 3.61606 3.80041 4.13971 4.25631 4.27441 4.42088 4.50092 4.61752 4.69270 4.72172 4.94427 5.01587 5.21022 5.34527 5.46855 5.48954 5.52655 5.82814 6.12060 6.19110 6.30605 6.46867 6.84164 7.18661 7.38058 8.91330 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.007534 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.625625 B = 3715.503521 C = 4533.017630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.032 0.968 4 C 0.028 3.972 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.267 1.267 13 N -0.676 5.676 14 C 0.129 3.871 15 C 0.308 3.692 16 N -0.547 5.547 17 C 0.129 3.871 18 C -0.214 4.214 19 C 0.133 3.867 20 N -0.528 5.528 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.001 0.999 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.341 0.659 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.196 0.804 31 H 0.191 0.809 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 1.170 -18.584 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.050 0.950 4 C -0.009 4.009 5 C -0.573 4.573 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.191 1.191 13 N -0.309 5.309 14 C -0.002 4.002 15 C 0.040 3.960 16 N -0.262 5.262 17 C -0.035 4.035 18 C -0.236 4.236 19 C -0.033 4.033 20 N -0.243 5.243 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.020 0.980 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.213 0.787 31 H 0.208 0.792 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.292 1.336 -17.800 17.897 hybrid contribution 1.989 -0.066 0.073 1.991 sum 0.696 1.270 -17.726 17.786 Atomic orbital electron populations 1.21709 0.94012 1.01496 1.01248 1.21491 0.95414 0.95058 0.89336 0.94988 1.19136 0.94823 0.94698 0.92292 1.21517 0.93338 1.34164 1.08294 0.92733 1.25871 1.03338 0.94767 0.95329 1.70089 1.37527 1.36618 1.12717 0.85535 0.79845 0.77740 0.78473 1.19799 1.20747 1.19097 1.60614 1.33839 1.32199 1.04248 1.20613 1.00943 0.92459 0.86160 1.22984 0.85415 0.92738 0.94859 1.68259 1.16264 1.20312 1.21397 1.23895 1.02849 0.89025 0.87772 1.23336 0.95014 1.01914 1.03308 1.23988 0.96224 0.91246 0.91812 1.68248 1.40638 1.09647 1.05738 0.93375 0.92348 0.91817 0.98025 0.98586 0.92786 0.84015 0.93603 0.88244 0.78748 0.79172 0.78092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.41 71.98 0.68 -3.94 16 2 C 0.10 4.17 2.59 44.91 0.12 4.28 16 3 H 0.03 1.38 7.80 -2.39 -0.02 1.37 16 4 C 0.03 1.50 4.57 29.85 0.14 1.64 16 5 C -0.54 -30.63 8.12 25.60 0.21 -30.42 16 6 H 0.05 3.05 7.49 -2.91 -0.02 3.03 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.13 13.29 21.44 0.28 -56.85 16 9 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.68 -28.19 6.30 -495.56 -3.12 -31.31 16 14 C 0.13 4.57 5.92 85.56 0.51 5.07 16 15 C 0.31 10.36 7.15 138.75 0.99 11.35 16 16 N -0.55 -17.54 10.33 -187.84 -1.94 -19.48 16 17 C 0.13 2.87 11.30 84.70 0.96 3.83 16 18 C -0.21 -3.55 10.17 22.44 0.23 -3.33 16 19 C 0.13 2.73 11.31 84.70 0.96 3.68 16 20 N -0.53 -15.92 10.33 -187.85 -1.94 -17.86 16 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.06 1.99 7.45 -2.39 -0.02 1.98 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 27 H 0.34 15.99 7.20 -89.70 -0.65 15.35 16 28 H 0.05 1.65 8.06 -2.39 -0.02 1.63 16 29 H 0.10 3.23 7.44 -2.39 -0.02 3.21 16 30 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -70.69 277.61 1.01 -69.68 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.46 Total: 15.70 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.24 Total: -7.06 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -6.72 Total: -125.49 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.69 1.01 -69.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705398206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.334 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds