Wall clock time and date at job start Mon Mar 30 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 C 1.50698 * 109.47335 * 240.00162 * 2 1 3 5 5 H 1.07993 * 120.00213 * 245.18350 * 4 2 1 6 6 C 1.37881 * 119.99885 * 65.17638 * 4 2 1 7 7 N 1.31517 * 120.00044 * 8.57294 * 6 4 2 8 8 Si 1.86801 * 119.99916 * 188.56163 * 6 4 2 9 9 H 1.48506 * 109.46579 * 90.00646 * 8 6 4 10 10 H 1.48504 * 109.47120 * 210.00356 * 8 6 4 11 11 H 1.48493 * 109.47180 * 330.00481 * 8 6 4 12 12 N 1.46899 * 109.47370 * 119.99588 * 2 1 3 13 13 C 1.47469 * 111.00141 * 281.69716 * 12 2 1 14 14 C 1.53511 * 87.93274 * 221.29430 * 13 12 2 15 15 N 1.46499 * 114.17359 * 272.37905 * 14 13 12 16 16 C 1.36884 * 126.39866 * 213.84014 * 15 14 13 17 17 C 1.34672 * 106.81505 * 180.02562 * 16 15 14 18 18 N 1.34125 * 108.02438 * 359.97438 * 17 16 15 19 19 C 1.30506 * 109.25279 * 359.72948 * 18 17 16 20 20 C 1.47475 * 110.99983 * 185.71967 * 12 2 1 21 21 H 1.09003 * 109.47147 * 174.83301 * 1 2 3 22 22 H 1.09000 * 109.47167 * 294.82801 * 1 2 3 23 23 H 1.08997 * 109.47617 * 54.83004 * 1 2 3 24 24 H 0.96995 * 120.00002 * 5.25865 * 7 6 4 25 25 H 1.09002 * 113.48076 * 336.06080 * 13 12 2 26 26 H 1.09004 * 113.47923 * 106.52914 * 13 12 2 27 27 H 1.09004 * 114.17393 * 139.67115 * 14 13 12 28 28 H 1.07998 * 126.59047 * 359.96283 * 16 15 14 29 29 H 1.08003 * 125.98726 * 180.02562 * 17 16 15 30 30 H 1.07997 * 125.64744 * 180.29516 * 19 18 17 31 31 H 1.08993 * 113.48416 * 253.47209 * 20 12 2 32 32 H 1.09007 * 113.47426 * 23.94846 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5825 -1.6346 -1.1336 6 6 1.7895 -0.1803 -2.4799 7 7 1.2710 1.0229 -2.5944 8 14 2.1974 -1.1710 -4.0101 9 1 1.0192 -1.9865 -4.4003 10 1 2.5492 -0.2474 -5.1186 11 1 3.3478 -2.0665 -3.7280 12 7 2.0197 -0.6924 1.1995 13 6 1.9328 0.1795 2.3856 14 6 3.3084 -0.3538 2.8096 15 7 3.2558 -1.5792 3.6108 16 6 4.1127 -1.9273 4.6199 17 6 3.7045 -3.1246 5.0819 18 7 2.6275 -3.4972 4.3746 19 6 2.3493 -2.5735 3.4957 20 6 3.4875 -0.5943 1.3040 21 1 -0.3633 -1.0235 -0.0926 22 1 -0.3633 0.4315 0.9327 23 1 -0.3634 0.5919 -0.8400 24 1 1.1302 1.5675 -1.8042 25 1 1.9347 1.2425 2.1443 26 1 1.1303 -0.0966 3.0697 27 1 3.9733 0.4049 3.2226 28 1 4.9548 -1.3527 4.9763 29 1 4.1634 -3.6860 5.8823 30 1 1.5314 -2.6011 2.7910 31 1 4.0027 -1.5262 1.0715 32 1 3.9043 0.2622 0.7741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708250912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:42 Heat of formation + Delta-G solvation = 101.605081 kcal Electronic energy + Delta-G solvation = -15109.139010 eV Core-core repulsion = 12686.202917 eV Total energy + Delta-G solvation = -2422.936093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.94101 -39.43273 -34.43572 -32.37646 -30.06335 -29.00601 -26.43054 -25.76833 -24.42659 -21.95410 -21.11242 -20.29479 -19.49250 -17.11649 -16.71712 -15.47650 -14.90723 -14.57061 -13.89095 -13.79762 -13.64155 -13.50400 -12.97984 -12.47049 -12.29239 -11.93948 -11.43317 -11.07917 -10.83990 -10.71786 -10.43409 -10.17517 -10.12053 -9.71749 -9.25699 -8.63433 -8.58125 -8.25487 -8.11317 -6.47226 -4.19367 2.30141 2.97376 3.39707 3.40593 3.44989 3.57235 4.32550 4.43072 4.57092 4.96251 5.00255 5.21732 5.22686 5.35531 5.63565 5.71636 5.80831 5.91088 6.01142 6.05261 6.27618 6.43907 6.56497 6.61125 6.83439 6.95191 6.99289 7.43707 7.50327 7.72243 8.09110 8.37331 8.41222 8.72446 9.50490 10.89345 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043656 B = 0.007186 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.219894 B = 3895.423040 C = 4108.413954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.168 3.832 3 H 0.001 0.999 4 C -0.591 4.591 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 1.068 2.932 9 H -0.286 1.286 10 H -0.286 1.286 11 H -0.289 1.289 12 N -0.458 5.458 13 C -0.009 4.009 14 C 0.088 3.912 15 N -0.431 5.431 16 C -0.069 4.069 17 C -0.036 4.036 18 N -0.511 5.511 19 C 0.213 3.787 20 C 0.019 3.981 21 H 0.048 0.952 22 H 0.016 0.984 23 H 0.058 0.942 24 H 0.269 0.731 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.210 0.790 31 H 0.082 0.918 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -0.549 10.700 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 H 0.019 0.981 4 C -0.629 4.629 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.545 5.545 8 Si 0.896 3.104 9 H -0.213 1.213 10 H -0.211 1.211 11 H -0.215 1.215 12 N -0.181 5.181 13 C -0.139 4.139 14 C -0.017 4.017 15 N -0.112 5.112 16 C -0.202 4.202 17 C -0.185 4.185 18 N -0.229 5.229 19 C -0.070 4.070 20 C -0.111 4.111 21 H 0.067 0.933 22 H 0.035 0.965 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.226 0.774 31 H 0.100 0.900 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.807 -1.779 9.010 9.942 hybrid contribution 0.920 1.655 1.402 2.356 sum 4.726 -0.123 10.412 11.435 Atomic orbital electron populations 1.21770 0.97773 1.00974 0.98491 1.19933 0.92698 0.92487 0.88784 0.98138 1.21843 1.39462 1.10432 0.91204 0.92580 1.25767 0.94024 0.96948 1.01285 1.70784 1.41236 1.08849 1.33613 0.83554 0.76467 0.75094 0.75244 1.21253 1.21143 1.21474 1.68971 1.06835 1.38854 1.03486 1.24187 0.95220 0.98154 0.96355 1.22685 1.00500 0.85350 0.93123 1.45144 1.23039 1.16793 1.26198 1.22624 1.00507 1.00814 0.96237 1.22217 0.97400 0.95595 1.03241 1.70367 1.16220 1.27709 1.08591 1.25246 0.96928 0.84466 1.00364 1.23890 0.93667 1.02965 0.90617 0.93323 0.96477 0.92348 0.92003 0.90258 0.89909 0.87323 0.81489 0.81889 0.77357 0.89968 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.08 37.16 0.34 -2.64 16 2 C 0.17 3.91 1.29 -68.87 -0.09 3.82 16 3 H 0.00 0.03 6.83 -51.93 -0.35 -0.33 16 4 C -0.59 -15.67 8.06 -34.44 -0.28 -15.95 16 5 H 0.06 1.54 7.76 -52.49 -0.41 1.13 16 6 C 0.02 0.66 5.25 -17.82 -0.09 0.57 16 7 N -0.91 -25.97 12.91 55.43 0.72 -25.25 16 8 Si 1.07 24.55 29.91 -169.99 -5.08 19.47 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.46 -8.89 5.01 -238.03 -1.19 -10.08 16 13 C -0.01 -0.14 6.46 -7.56 -0.05 -0.19 16 14 C 0.09 1.25 5.12 -67.72 -0.35 0.90 16 15 N -0.43 -6.49 2.97 -111.17 -0.33 -6.82 16 16 C -0.07 -0.92 11.58 -16.56 -0.19 -1.12 16 17 C -0.04 -0.53 11.87 -17.81 -0.21 -0.75 16 18 N -0.51 -8.97 11.25 -14.66 -0.16 -9.14 16 19 C 0.21 3.61 11.36 -90.37 -1.03 2.58 16 20 C 0.02 0.32 6.70 -7.55 -0.05 0.27 16 21 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 22 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 23 H 0.06 1.42 6.54 -51.93 -0.34 1.08 16 24 H 0.27 7.60 6.21 -40.82 -0.25 7.35 16 25 H 0.08 1.20 7.63 -51.93 -0.40 0.80 16 26 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 27 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 30 H 0.21 3.60 7.40 -52.49 -0.39 3.21 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.49 7.84 -51.93 -0.41 1.09 16 LS Contribution 266.60 15.07 4.02 4.02 Total: -1.00 -29.77 266.60 -8.31 -38.08 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.27 Total: 2.22 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -2.00 Total: -12.49 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.97 Total: -51.29 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.77 -8.31 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708250912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.681 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds