Wall clock time and date at job start Mon Mar 30 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 C 1.50698 * 109.47335 * 240.00162 * 2 1 3 5 5 H 1.07993 * 120.00213 * 245.18350 * 4 2 1 6 6 C 1.37881 * 119.99885 * 65.17638 * 4 2 1 7 7 N 1.31517 * 120.00044 * 8.57294 * 6 4 2 8 8 Si 1.86801 * 119.99916 * 188.56163 * 6 4 2 9 9 H 1.48506 * 109.46579 * 90.00646 * 8 6 4 10 10 H 1.48504 * 109.47120 * 210.00356 * 8 6 4 11 11 H 1.48493 * 109.47180 * 330.00481 * 8 6 4 12 12 N 1.46899 * 109.47370 * 119.99588 * 2 1 3 13 13 C 1.47469 * 111.00141 * 281.69716 * 12 2 1 14 14 C 1.53511 * 87.93274 * 221.29430 * 13 12 2 15 15 N 1.46499 * 114.17359 * 272.37905 * 14 13 12 16 16 C 1.36884 * 126.39866 * 213.84014 * 15 14 13 17 17 C 1.34672 * 106.81505 * 180.02562 * 16 15 14 18 18 N 1.34125 * 108.02438 * 359.97438 * 17 16 15 19 19 C 1.30506 * 109.25279 * 359.72948 * 18 17 16 20 20 C 1.47475 * 110.99983 * 185.71967 * 12 2 1 21 21 H 1.09003 * 109.47147 * 174.83301 * 1 2 3 22 22 H 1.09000 * 109.47167 * 294.82801 * 1 2 3 23 23 H 1.08997 * 109.47617 * 54.83004 * 1 2 3 24 24 H 0.96995 * 120.00002 * 5.25865 * 7 6 4 25 25 H 1.09002 * 113.48076 * 336.06080 * 13 12 2 26 26 H 1.09004 * 113.47923 * 106.52914 * 13 12 2 27 27 H 1.09004 * 114.17393 * 139.67115 * 14 13 12 28 28 H 1.07998 * 126.59047 * 359.96283 * 16 15 14 29 29 H 1.08003 * 125.98726 * 180.02562 * 17 16 15 30 30 H 1.07997 * 125.64744 * 180.29516 * 19 18 17 31 31 H 1.08993 * 113.48416 * 253.47209 * 20 12 2 32 32 H 1.09007 * 113.47426 * 23.94846 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5825 -1.6346 -1.1336 6 6 1.7895 -0.1803 -2.4799 7 7 1.2710 1.0229 -2.5944 8 14 2.1974 -1.1710 -4.0101 9 1 1.0192 -1.9865 -4.4003 10 1 2.5492 -0.2474 -5.1186 11 1 3.3478 -2.0665 -3.7280 12 7 2.0197 -0.6924 1.1995 13 6 1.9328 0.1795 2.3856 14 6 3.3084 -0.3538 2.8096 15 7 3.2558 -1.5792 3.6108 16 6 4.1127 -1.9273 4.6199 17 6 3.7045 -3.1246 5.0819 18 7 2.6275 -3.4972 4.3746 19 6 2.3493 -2.5735 3.4957 20 6 3.4875 -0.5943 1.3040 21 1 -0.3633 -1.0235 -0.0926 22 1 -0.3633 0.4315 0.9327 23 1 -0.3634 0.5919 -0.8400 24 1 1.1302 1.5675 -1.8042 25 1 1.9347 1.2425 2.1443 26 1 1.1303 -0.0966 3.0697 27 1 3.9733 0.4049 3.2226 28 1 4.9548 -1.3527 4.9763 29 1 4.1634 -3.6860 5.8823 30 1 1.5314 -2.6011 2.7910 31 1 4.0027 -1.5262 1.0715 32 1 3.9043 0.2622 0.7741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708250912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:42 Heat of formation + Delta-G solvation = 82.947848 kcal Electronic energy + Delta-G solvation = -15109.948049 eV Core-core repulsion = 12686.202917 eV Total energy + Delta-G solvation = -2423.745131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.13334 -40.82893 -36.25544 -33.85289 -31.77688 -30.16649 -27.97534 -27.26575 -26.24604 -23.38781 -22.31873 -21.88575 -20.71710 -19.00885 -17.95763 -17.03152 -16.18645 -16.05823 -15.63382 -15.29260 -14.95800 -14.77732 -14.36787 -13.90992 -13.70502 -13.52159 -13.15618 -12.97396 -12.61974 -12.27618 -12.14752 -11.98089 -11.67046 -10.92861 -10.62416 -10.53042 -10.48872 -9.73819 -9.36906 -8.62378 -6.34052 1.15050 1.52210 1.57897 1.76271 1.82501 2.26855 2.52891 3.03998 3.15426 3.26596 3.73330 3.94632 4.05671 4.10601 4.35829 4.46339 4.52780 4.60027 4.64687 4.71041 4.73793 4.83089 4.85073 5.03117 5.20394 5.44419 5.61689 5.89122 5.93747 6.13010 6.30327 6.39198 6.62172 7.20487 7.41975 8.75148 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043656 B = 0.007186 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.219894 B = 3895.423040 C = 4108.413954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.172 3.828 3 H -0.015 1.015 4 C -0.597 4.597 5 H 0.041 0.959 6 C -0.021 4.021 7 N -0.931 5.931 8 Si 1.108 2.892 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.476 5.476 13 C -0.006 4.006 14 C 0.115 3.885 15 N -0.433 5.433 16 C -0.051 4.051 17 C -0.057 4.057 18 N -0.540 5.540 19 C 0.189 3.811 20 C 0.014 3.986 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.260 0.740 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.210 0.790 29 H 0.189 0.811 30 H 0.196 0.804 31 H 0.065 0.935 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 -0.313 12.157 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.003 0.997 4 C -0.636 4.636 5 H 0.059 0.941 6 C -0.220 4.220 7 N -0.569 5.569 8 Si 0.932 3.068 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.199 5.199 13 C -0.136 4.136 14 C 0.010 3.990 15 N -0.114 5.114 16 C -0.183 4.183 17 C -0.204 4.204 18 N -0.259 5.259 19 C -0.094 4.094 20 C -0.116 4.116 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.227 0.773 29 H 0.206 0.794 30 H 0.213 0.787 31 H 0.084 0.916 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.069 -1.552 10.493 11.756 hybrid contribution 0.561 1.545 1.040 1.945 sum 5.630 -0.007 11.533 12.834 Atomic orbital electron populations 1.21607 0.97473 0.99957 0.98895 1.19738 0.92853 0.91443 0.89528 0.99731 1.22104 1.38845 1.09787 0.92821 0.94106 1.26938 0.93675 0.97176 1.04212 1.70882 1.43077 1.09674 1.33236 0.83020 0.76938 0.74284 0.72588 1.20393 1.20900 1.20211 1.68901 1.08272 1.39605 1.03126 1.24208 0.96696 0.98140 0.94513 1.22593 0.99873 0.85516 0.90970 1.45242 1.22989 1.16615 1.26596 1.23294 1.00254 1.00374 0.94389 1.22766 0.96983 0.96695 1.03974 1.70316 1.17754 1.28487 1.09334 1.25027 0.97803 0.85582 1.00970 1.23863 0.92166 1.01944 0.93595 0.94414 0.93755 0.94655 0.92920 0.89241 0.89301 0.82914 0.77283 0.79402 0.78686 0.91643 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 9.08 71.98 0.65 -4.84 16 2 C 0.17 8.05 1.29 44.17 0.06 8.11 16 3 H -0.01 -0.73 6.83 -2.39 -0.02 -0.75 16 4 C -0.60 -32.09 8.06 25.60 0.21 -31.89 16 5 H 0.04 2.27 7.76 -2.91 -0.02 2.25 16 6 C -0.02 -1.12 5.25 84.66 0.44 -0.68 16 7 N -0.93 -53.94 12.91 21.45 0.28 -53.66 16 8 Si 1.11 49.59 29.91 68.60 2.05 51.64 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 N -0.48 -18.24 5.01 -907.00 -4.54 -22.78 16 13 C -0.01 -0.18 6.46 83.57 0.54 0.36 16 14 C 0.11 2.89 5.12 45.45 0.23 3.12 16 15 N -0.43 -11.89 2.97 -505.62 -1.50 -13.40 16 16 C -0.05 -1.16 11.58 83.09 0.96 -0.20 16 17 C -0.06 -1.53 11.87 83.52 0.99 -0.54 16 18 N -0.54 -18.43 11.25 -200.31 -2.25 -20.69 16 19 C 0.19 6.25 11.36 180.26 2.05 8.30 16 20 C 0.01 0.48 6.70 83.57 0.56 1.04 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.04 1.72 7.72 -2.39 -0.02 1.70 16 23 H 0.03 1.73 6.54 -2.39 -0.02 1.72 16 24 H 0.26 15.05 6.21 -92.71 -0.58 14.48 16 25 H 0.09 2.48 7.63 -2.39 -0.02 2.46 16 26 H 0.09 2.51 8.00 -2.39 -0.02 2.49 16 27 H 0.15 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.19 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.20 6.84 7.40 -2.91 -0.02 6.82 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 2.75 7.84 -2.38 -0.02 2.73 16 Total: -1.00 -64.94 266.60 2.01 -62.93 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.29 Total: 13.18 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 6.69 Total: -17.21 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -8.02 Total: -110.53 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -64.94 2.01 -62.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708250912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.875 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds