Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30589 * 125.56743 * 2 1 4 4 C 1.34344 * 109.34425 * 180.22961 * 3 2 1 5 5 N 1.40449 * 126.04772 * 179.73836 * 4 3 2 6 6 C 1.35203 * 107.91206 * 359.76378 * 4 3 2 7 7 N 1.34936 * 125.57076 * 179.81829 * 2 1 3 8 8 C 1.46497 * 126.39582 * 0.04404 * 7 2 1 9 9 C 1.52995 * 109.47508 * 88.22518 * 8 7 2 10 10 C 1.50705 * 115.54963 * 299.92526 * 9 8 7 11 11 H 1.08001 * 120.00384 * 93.35669 * 10 9 8 12 12 C 1.37881 * 119.99767 * 273.35522 * 10 9 8 13 13 N 1.31506 * 120.00167 * 174.75582 * 12 10 9 14 14 Si 1.86802 * 119.99890 * 354.75475 * 12 10 9 15 15 H 1.48500 * 109.47373 * 274.56684 * 14 12 10 16 16 H 1.48508 * 109.47038 * 34.56623 * 14 12 10 17 17 H 1.48498 * 109.47136 * 154.56227 * 14 12 10 18 18 C 1.53002 * 117.51748 * 85.61827 * 9 8 7 19 19 C 1.53000 * 117.50368 * 154.24877 * 9 8 7 20 20 H 1.08996 * 109.47126 * 271.40793 * 1 2 3 21 21 H 1.08998 * 109.47097 * 31.41158 * 1 2 3 22 22 H 1.08996 * 109.46692 * 151.40510 * 1 2 3 23 23 H 0.96999 * 120.00111 * 180.02562 * 5 4 3 24 24 H 0.97003 * 119.99511 * 0.02839 * 5 4 3 25 25 H 1.07995 * 126.66498 * 179.97438 * 6 4 3 26 26 H 1.09000 * 109.46652 * 328.22368 * 8 7 2 27 27 H 1.09002 * 109.46631 * 208.22731 * 8 7 2 28 28 H 0.97005 * 120.00330 * 179.97438 * 13 12 10 29 29 H 1.08999 * 117.49809 * 214.97378 * 18 9 8 30 30 H 1.09000 * 117.49973 * 359.97438 * 18 9 8 31 31 H 1.08998 * 117.49374 * 359.97438 * 19 9 8 32 32 H 1.08990 * 117.49902 * 144.99545 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2666 1.0623 0.0000 4 6 3.5566 0.6869 -0.0051 5 7 4.6674 1.5464 -0.0119 6 6 3.5964 -0.6645 -0.0031 7 7 2.2920 -1.0976 0.0035 8 6 1.8385 -2.4906 0.0070 9 6 1.6390 -2.9657 -1.4336 10 6 0.6257 -2.1932 -2.2383 11 1 0.9433 -1.3655 -2.8552 12 6 -0.7070 -2.5431 -2.1872 13 7 -1.6042 -1.8076 -2.8063 14 14 -1.2380 -4.0621 -1.2384 15 1 -1.1135 -5.2584 -2.1093 16 1 -0.3717 -4.2274 -0.0436 17 1 -2.6508 -3.9081 -0.8079 18 6 2.8620 -3.5108 -2.1739 19 6 1.7622 -4.4661 -1.7062 20 1 -0.3633 0.0252 1.0273 21 1 -0.3633 0.8770 -0.5356 22 1 -0.3632 -0.9023 -0.4918 23 1 5.5650 1.1788 -0.0156 24 1 4.5368 2.5076 -0.0128 25 1 4.4813 -1.2836 -0.0063 26 1 0.8949 -2.5640 0.5478 27 1 2.5867 -3.1150 0.4952 28 1 -2.5418 -2.0540 -2.7706 29 1 2.9336 -3.3107 -3.2430 30 1 3.8091 -3.5306 -1.6348 31 1 1.9859 -5.1147 -0.8592 32 1 1.1104 -4.8945 -2.4674 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067779.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = 89.246297 kcal Electronic energy + Delta-G solvation = -15464.426712 eV Core-core repulsion = 13040.954702 eV Total energy + Delta-G solvation = -2423.472010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16785 -37.20949 -34.01303 -32.36569 -31.76678 -29.92143 -26.80069 -25.69486 -24.64518 -21.78631 -20.25837 -19.79613 -18.78759 -16.80789 -15.90462 -15.49524 -15.16240 -14.84469 -14.32715 -13.72698 -13.03029 -12.90547 -12.62875 -12.37727 -12.00052 -11.80351 -11.45844 -11.13475 -10.83117 -10.67919 -10.48174 -10.00146 -9.58053 -9.30065 -9.11743 -8.68864 -8.58674 -8.35582 -6.62832 -6.21052 -4.23523 2.93851 3.17750 3.28223 3.29652 3.66574 4.04969 4.28559 4.40243 4.82731 5.03557 5.43161 5.59036 5.68808 5.74239 5.88346 5.99450 6.14969 6.24604 6.33940 6.37232 6.56085 6.59665 6.82867 6.92992 6.97897 7.19742 7.25577 7.59186 7.98739 8.22165 8.33802 8.41507 8.85121 9.09416 9.38514 10.89270 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033215 B = 0.011280 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.795327 B = 2481.769814 C = 2926.278417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.268 3.732 3 N -0.544 5.544 4 C 0.268 3.732 5 N -0.866 5.866 6 C -0.145 4.145 7 N -0.422 5.422 8 C 0.140 3.860 9 C -0.017 4.017 10 C -0.481 4.481 11 H 0.079 0.921 12 C 0.080 3.920 13 N -0.886 5.886 14 Si 0.874 3.126 15 H -0.277 1.277 16 H -0.263 1.263 17 H -0.292 1.292 18 C -0.173 4.173 19 C -0.197 4.197 20 H 0.058 0.942 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.397 0.603 24 H 0.394 0.606 25 H 0.155 0.845 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.267 0.733 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -1.311 6.358 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 N -0.272 5.272 4 C 0.042 3.958 5 N -0.416 5.416 6 C -0.279 4.279 7 N -0.104 5.104 8 C 0.017 3.983 9 C -0.019 4.019 10 C -0.518 4.518 11 H 0.097 0.903 12 C -0.124 4.124 13 N -0.522 5.522 14 Si 0.701 3.299 15 H -0.202 1.202 16 H -0.187 1.187 17 H -0.219 1.219 18 C -0.210 4.210 19 C -0.235 4.235 20 H 0.076 0.924 21 H 0.098 0.902 22 H 0.131 0.869 23 H 0.225 0.775 24 H 0.221 0.779 25 H 0.172 0.828 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.489 -0.729 6.326 9.092 hybrid contribution 0.394 -1.552 0.284 1.627 sum 6.883 -2.281 6.611 9.812 Atomic orbital electron populations 1.20466 0.85075 1.06912 1.01427 1.22816 0.95295 0.80340 1.01073 1.69873 1.00214 1.29162 1.27961 1.17466 0.87402 0.87666 1.03241 1.41144 1.03596 1.06763 1.90083 1.21354 0.87535 0.94062 1.24980 1.44832 1.05139 1.07160 1.53254 1.21625 0.99339 0.78691 0.98637 1.19741 0.97906 0.92046 0.92174 1.20157 0.89461 1.15734 1.26461 0.90340 1.24958 0.96323 0.96140 0.94932 1.69902 1.01796 1.37874 1.42608 0.86988 0.77432 0.84202 0.81230 1.20249 1.18714 1.21915 1.22783 0.92213 1.05375 1.00611 1.22997 1.03732 0.93890 1.02847 0.92353 0.90160 0.86901 0.77516 0.77913 0.82774 0.89739 0.91623 0.92317 0.89459 0.91071 0.90798 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.82 36.01 0.35 -1.32 16 2 C 0.27 5.88 7.41 -155.44 -1.15 4.73 16 3 N -0.54 -12.05 11.26 -9.80 -0.11 -12.16 16 4 C 0.27 5.26 8.31 -153.32 -1.27 3.99 16 5 N -0.87 -12.94 9.18 31.02 0.28 -12.66 16 6 C -0.14 -2.78 11.64 -16.11 -0.19 -2.96 16 7 N -0.42 -8.69 2.66 -113.60 -0.30 -8.99 16 8 C 0.14 2.75 5.39 -4.05 -0.02 2.73 16 9 C -0.02 -0.37 1.08 -155.66 -0.17 -0.54 16 10 C -0.48 -12.37 7.25 -34.44 -0.25 -12.62 16 11 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 12 C 0.08 2.07 3.99 -17.82 -0.07 2.00 16 13 N -0.89 -24.73 13.96 55.43 0.77 -23.95 16 14 Si 0.87 19.79 24.68 -169.99 -4.20 15.60 16 15 H -0.28 -6.27 7.03 56.52 0.40 -5.88 16 16 H -0.26 -5.51 6.06 56.52 0.34 -5.17 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.17 -3.37 9.95 -26.73 -0.27 -3.63 16 19 C -0.20 -3.87 7.46 -26.73 -0.20 -4.07 16 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 22 H 0.11 2.59 4.37 -51.93 -0.23 2.36 16 23 H 0.40 4.69 8.96 -40.82 -0.37 4.32 16 24 H 0.39 5.41 8.96 -40.82 -0.37 5.05 16 25 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 26 H 0.08 1.66 6.60 -51.93 -0.34 1.32 16 27 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.90 6.85 -51.93 -0.36 1.55 16 LS Contribution 263.22 15.07 3.97 3.97 Total: -1.00 -29.29 263.22 -7.06 -36.35 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -4.24 Total: 13.53 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.24 Total: -11.69 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.65 Total: -57.76 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.20 Total: 15.60 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.29 -7.06 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067779.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.596 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds