Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30589 * 125.56743 * 2 1 4 4 C 1.34344 * 109.34425 * 180.22961 * 3 2 1 5 5 N 1.40449 * 126.04772 * 179.73836 * 4 3 2 6 6 C 1.35203 * 107.91206 * 359.76378 * 4 3 2 7 7 N 1.34936 * 125.57076 * 179.81829 * 2 1 3 8 8 C 1.46497 * 126.39582 * 0.04404 * 7 2 1 9 9 C 1.52995 * 109.47508 * 88.22518 * 8 7 2 10 10 C 1.50705 * 115.54963 * 299.92526 * 9 8 7 11 11 H 1.08001 * 120.00384 * 93.35669 * 10 9 8 12 12 C 1.37881 * 119.99767 * 273.35522 * 10 9 8 13 13 N 1.31506 * 120.00167 * 174.75582 * 12 10 9 14 14 Si 1.86802 * 119.99890 * 354.75475 * 12 10 9 15 15 H 1.48500 * 109.47373 * 274.56684 * 14 12 10 16 16 H 1.48508 * 109.47038 * 34.56623 * 14 12 10 17 17 H 1.48498 * 109.47136 * 154.56227 * 14 12 10 18 18 C 1.53002 * 117.51748 * 85.61827 * 9 8 7 19 19 C 1.53000 * 117.50368 * 154.24877 * 9 8 7 20 20 H 1.08996 * 109.47126 * 271.40793 * 1 2 3 21 21 H 1.08998 * 109.47097 * 31.41158 * 1 2 3 22 22 H 1.08996 * 109.46692 * 151.40510 * 1 2 3 23 23 H 0.96999 * 120.00111 * 180.02562 * 5 4 3 24 24 H 0.97003 * 119.99511 * 0.02839 * 5 4 3 25 25 H 1.07995 * 126.66498 * 179.97438 * 6 4 3 26 26 H 1.09000 * 109.46652 * 328.22368 * 8 7 2 27 27 H 1.09002 * 109.46631 * 208.22731 * 8 7 2 28 28 H 0.97005 * 120.00330 * 179.97438 * 13 12 10 29 29 H 1.08999 * 117.49809 * 214.97378 * 18 9 8 30 30 H 1.09000 * 117.49973 * 359.97438 * 18 9 8 31 31 H 1.08998 * 117.49374 * 359.97438 * 19 9 8 32 32 H 1.08990 * 117.49902 * 144.99545 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2666 1.0623 0.0000 4 6 3.5566 0.6869 -0.0051 5 7 4.6674 1.5464 -0.0119 6 6 3.5964 -0.6645 -0.0031 7 7 2.2920 -1.0976 0.0035 8 6 1.8385 -2.4906 0.0070 9 6 1.6390 -2.9657 -1.4336 10 6 0.6257 -2.1932 -2.2383 11 1 0.9433 -1.3655 -2.8552 12 6 -0.7070 -2.5431 -2.1872 13 7 -1.6042 -1.8076 -2.8063 14 14 -1.2380 -4.0621 -1.2384 15 1 -1.1135 -5.2584 -2.1093 16 1 -0.3717 -4.2274 -0.0436 17 1 -2.6508 -3.9081 -0.8079 18 6 2.8620 -3.5108 -2.1739 19 6 1.7622 -4.4661 -1.7062 20 1 -0.3633 0.0252 1.0273 21 1 -0.3633 0.8770 -0.5356 22 1 -0.3632 -0.9023 -0.4918 23 1 5.5650 1.1788 -0.0156 24 1 4.5368 2.5076 -0.0128 25 1 4.4813 -1.2836 -0.0063 26 1 0.8949 -2.5640 0.5478 27 1 2.5867 -3.1150 0.4952 28 1 -2.5418 -2.0540 -2.7706 29 1 2.9336 -3.3107 -3.2430 30 1 3.8091 -3.5306 -1.6348 31 1 1.9859 -5.1147 -0.8592 32 1 1.1104 -4.8945 -2.4674 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067779.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = 70.118579 kcal Electronic energy + Delta-G solvation = -15465.256152 eV Core-core repulsion = 13040.954702 eV Total energy + Delta-G solvation = -2424.301450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.70513 -38.82722 -35.41077 -34.32223 -33.30874 -31.46176 -28.42147 -27.53301 -26.21048 -23.33106 -21.76288 -21.45119 -20.43811 -18.54035 -17.52017 -16.91649 -16.76892 -16.40623 -15.86981 -15.28912 -14.78600 -14.46376 -14.38718 -13.97215 -13.56149 -13.36070 -13.19588 -12.87935 -12.51090 -12.26428 -12.07829 -11.73202 -11.16739 -11.01039 -10.74572 -10.48990 -10.34156 -9.93487 -8.21785 -8.03456 -6.28218 1.36718 1.41268 1.43445 1.53352 2.17929 2.39950 2.49778 3.07946 3.11229 3.25105 3.93822 4.04866 4.19303 4.23079 4.36142 4.42753 4.66650 4.71841 4.80382 4.85111 4.96571 5.02441 5.23379 5.32745 5.45314 5.64485 5.73078 5.78252 6.35655 6.52025 6.76499 6.90040 7.00742 7.37133 7.68531 8.92793 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033215 B = 0.011280 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.795327 B = 2481.769814 C = 2926.278417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.238 3.762 3 N -0.572 5.572 4 C 0.250 3.750 5 N -0.852 5.852 6 C -0.144 4.144 7 N -0.423 5.423 8 C 0.141 3.859 9 C -0.044 4.044 10 C -0.472 4.472 11 H 0.015 0.985 12 C 0.034 3.966 13 N -0.937 5.937 14 Si 0.929 3.071 15 H -0.273 1.273 16 H -0.226 1.226 17 H -0.300 1.300 18 C -0.163 4.163 19 C -0.182 4.182 20 H 0.085 0.915 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.413 0.587 24 H 0.399 0.601 25 H 0.189 0.811 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.085 -3.362 8.326 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.025 4.025 3 N -0.301 5.301 4 C 0.024 3.976 5 N -0.404 5.404 6 C -0.279 4.279 7 N -0.105 5.105 8 C 0.019 3.981 9 C -0.045 4.045 10 C -0.510 4.510 11 H 0.034 0.966 12 C -0.165 4.165 13 N -0.575 5.575 14 Si 0.753 3.247 15 H -0.199 1.199 16 H -0.149 1.149 17 H -0.227 1.227 18 C -0.200 4.200 19 C -0.220 4.220 20 H 0.104 0.896 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.244 0.756 24 H 0.227 0.773 25 H 0.206 0.794 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.517 -2.781 8.303 12.215 hybrid contribution -0.141 -0.801 -0.425 0.917 sum 8.376 -3.582 7.878 12.044 Atomic orbital electron populations 1.20340 0.85282 1.05006 1.02611 1.22913 0.95639 0.81205 1.02721 1.69814 1.01717 1.29910 1.28683 1.17900 0.87546 0.88862 1.03264 1.41103 1.03262 1.06716 1.89315 1.21922 0.87855 0.94331 1.23766 1.44960 1.05548 1.07270 1.52750 1.21672 1.00730 0.78582 0.97116 1.19652 0.98334 0.93364 0.93161 1.20049 0.90815 1.14221 1.25869 0.96629 1.25662 0.96098 0.98907 0.95807 1.70061 1.02103 1.40201 1.45181 0.86085 0.77161 0.80191 0.81233 1.19903 1.14867 1.22700 1.22811 0.93131 1.04327 0.99778 1.23051 1.02799 0.92687 1.03466 0.89624 0.91668 0.89070 0.75573 0.77268 0.79415 0.89931 0.87617 0.92550 0.91395 0.87708 0.86950 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.15 9.82 71.24 0.70 -2.45 16 2 C 0.24 10.43 7.41 138.14 1.02 11.46 16 3 N -0.57 -25.26 11.26 -184.91 -2.08 -27.34 16 4 C 0.25 9.43 8.31 131.06 1.09 10.52 16 5 N -0.85 -23.66 9.18 -55.78 -0.51 -24.18 16 6 C -0.14 -5.11 11.64 83.11 0.97 -4.15 16 7 N -0.42 -16.61 2.66 -513.32 -1.37 -17.97 16 8 C 0.14 5.06 5.39 86.38 0.47 5.53 16 9 C -0.04 -1.78 1.08 -52.93 -0.06 -1.84 16 10 C -0.47 -24.81 7.25 25.60 0.19 -24.62 16 11 H 0.02 0.99 8.06 -2.91 -0.02 0.96 16 12 C 0.03 1.80 3.99 84.66 0.34 2.13 16 13 N -0.94 -54.64 13.96 21.45 0.30 -54.34 16 14 Si 0.93 39.90 24.68 68.60 1.69 41.59 16 15 H -0.27 -11.56 7.03 99.48 0.70 -10.86 16 16 H -0.23 -8.33 6.06 99.48 0.60 -7.73 16 17 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 18 C -0.16 -5.86 9.95 30.60 0.30 -5.56 16 19 C -0.18 -6.43 7.46 30.59 0.23 -6.21 16 20 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 21 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 22 H 0.09 4.29 4.37 -2.39 -0.01 4.28 16 23 H 0.41 8.57 8.96 -92.71 -0.83 7.74 16 24 H 0.40 10.33 8.96 -92.71 -0.83 9.50 16 25 H 0.19 5.21 8.06 -2.91 -0.02 5.18 16 26 H 0.08 2.97 6.60 -2.39 -0.02 2.95 16 27 H 0.11 2.96 8.11 -2.39 -0.02 2.94 16 28 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.08 2.93 6.85 -2.39 -0.02 2.91 16 Total: -1.00 -66.08 263.22 2.65 -63.43 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.63 Total: 34.00 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 5.25 Total: -15.18 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -3.66 Total: -123.83 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.69 Total: 41.59 kcal Total: -66.08 2.65 -63.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067779.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.544 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds