Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47386 * 2 1 4 4 C 1.50701 * 109.47402 * 180.02562 * 3 2 1 5 5 C 1.39015 * 126.76884 * 270.04479 * 4 3 2 6 6 C 1.41495 * 126.02367 * 359.94017 * 5 4 3 7 7 H 1.08002 * 119.99590 * 0.02562 * 6 5 4 8 8 C 1.39728 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.30984 * 120.00135 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99969 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47197 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47081 * 119.99818 * 10 8 6 13 13 H 1.48503 * 109.46931 * 239.99508 * 10 8 6 14 14 N 1.34843 * 107.95625 * 179.97438 * 5 4 3 15 15 N 1.28668 * 109.63294 * 359.97438 * 14 5 4 16 16 N 1.35010 * 126.77072 * 89.99997 * 4 3 2 17 17 C 1.46501 * 126.49533 * 0.05802 * 16 4 3 18 18 C 1.53000 * 117.49940 * 188.74698 * 17 16 4 19 19 C 1.53000 * 117.49815 * 120.08676 * 17 16 4 20 20 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46370 * 299.99945 * 1 2 3 22 22 H 1.09000 * 109.47298 * 59.99243 * 1 2 3 23 23 H 1.09003 * 109.46977 * 240.00439 * 2 1 3 24 24 H 1.08995 * 109.47391 * 120.00275 * 2 1 3 25 25 H 1.09008 * 109.47145 * 60.00113 * 3 2 1 26 26 H 1.09006 * 109.47237 * 300.00950 * 3 2 1 27 27 H 0.97001 * 120.00199 * 180.02562 * 9 8 6 28 28 H 1.09001 * 115.55004 * 334.41515 * 17 16 4 29 29 H 1.09005 * 117.49635 * 0.02562 * 18 17 16 30 30 H 1.08994 * 117.49943 * 145.02292 * 18 17 16 31 31 H 1.08998 * 117.49617 * 214.97810 * 19 17 16 32 32 H 1.09000 * 117.50189 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3797 1.4414 1.1126 6 6 3.9617 1.4414 2.4644 7 1 2.9086 1.4417 2.7039 8 6 4.9114 1.4408 3.4893 9 7 6.1886 1.4398 3.1988 10 14 4.3595 1.4400 5.2740 11 1 2.8757 1.4407 5.3333 12 1 4.8819 0.2271 5.9531 13 1 4.8822 2.6521 5.9543 14 7 5.6559 1.4413 0.6772 15 7 5.6738 1.4416 -0.6093 16 7 4.3549 1.4426 -1.0825 17 6 3.9324 1.4440 -2.4853 18 6 5.0130 1.2376 -3.5486 19 6 4.3812 2.6186 -3.3570 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6768 1.9563 0.8901 26 1 1.6766 1.9564 -0.8899 27 1 6.8478 1.4391 3.9103 28 1 2.9472 1.0203 -2.6800 29 1 6.0381 1.1003 -3.2044 30 1 4.7385 0.6784 -4.4431 31 1 3.6913 2.9674 -4.1254 32 1 4.9903 3.3906 -2.8867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958540864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = 77.549318 kcal Electronic energy + Delta-G solvation = -14985.971876 eV Core-core repulsion = 12561.992647 eV Total energy + Delta-G solvation = -2423.979229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.92156 -38.07726 -36.03081 -35.21205 -32.62782 -31.35821 -28.14886 -26.32211 -24.62579 -23.39525 -22.55046 -21.72203 -20.55065 -18.81881 -17.46935 -16.84236 -16.05242 -15.80887 -15.49194 -15.06728 -14.71875 -14.10241 -13.91282 -13.27447 -12.95439 -12.88456 -12.64295 -12.49578 -12.38253 -12.28902 -12.03041 -12.00078 -11.59495 -11.50072 -11.45202 -11.11556 -10.75302 -9.99682 -9.34920 -8.30155 -6.18334 0.94185 1.42452 1.43085 1.59061 1.91609 2.32533 2.33592 2.82532 3.52079 3.58413 3.85146 3.95658 4.05625 4.15992 4.35032 4.58696 4.66231 4.68172 4.77844 4.89194 4.95607 5.04054 5.12349 5.18449 5.23798 5.29821 5.36884 5.54160 5.56628 5.67988 6.40398 6.47862 6.89474 7.09601 8.28205 8.69942 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025627 B = 0.009966 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.347601 B = 2808.998183 C = 3733.969851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.013 4.013 4 C -0.078 4.078 5 C 0.103 3.897 6 C -0.477 4.477 7 H 0.092 0.908 8 C 0.017 3.983 9 N -0.831 5.831 10 Si 0.986 3.014 11 H -0.247 1.247 12 H -0.274 1.274 13 H -0.274 1.274 14 N -0.286 5.286 15 N -0.176 5.176 16 N -0.335 5.335 17 C 0.051 3.949 18 C -0.159 4.159 19 C -0.163 4.163 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.271 0.729 28 H 0.166 0.834 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -0.672 -9.311 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.052 4.052 4 C -0.213 4.213 5 C -0.030 4.030 6 C -0.513 4.513 7 H 0.110 0.890 8 C -0.196 4.196 9 N -0.459 5.459 10 Si 0.807 3.193 11 H -0.170 1.170 12 H -0.200 1.200 13 H -0.199 1.199 14 N -0.154 5.154 15 N -0.150 5.150 16 N -0.128 5.128 17 C -0.053 4.053 18 C -0.197 4.197 19 C -0.202 4.202 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.183 0.817 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.763 -0.675 -9.674 13.761 hybrid contribution -0.359 0.030 1.215 1.267 sum -10.122 -0.645 -8.459 13.207 Atomic orbital electron populations 1.21714 0.93195 1.02301 1.02564 1.21433 0.97176 0.95394 1.01028 1.19843 0.84465 0.98049 1.02888 1.22267 0.95549 1.17173 0.86310 1.19621 0.86488 1.01758 0.95179 1.18916 0.94560 1.49741 0.88130 0.88981 1.26789 0.94393 0.92750 1.05636 1.70200 1.02255 1.38387 1.35082 0.85106 0.79907 0.78067 0.76211 1.17046 1.19951 1.19938 1.75029 1.21792 1.17817 1.00781 1.81333 0.98516 1.28729 1.06451 1.49360 1.05778 1.51842 1.05809 1.22238 1.00633 1.07387 0.75016 1.23330 0.97323 0.99867 0.99134 1.23469 1.03742 0.91354 1.01629 0.91910 0.92510 0.91159 0.92755 0.94072 0.90715 0.89828 0.91885 0.81734 0.90288 0.83757 0.83504 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.91 71.98 0.71 -2.35 16 2 C -0.11 -3.41 5.92 30.60 0.18 -3.23 16 3 C -0.01 -0.45 5.22 29.85 0.16 -0.29 16 4 C -0.08 -3.68 6.37 42.26 0.27 -3.41 16 5 C 0.10 5.99 6.72 39.67 0.27 6.25 16 6 C -0.48 -27.17 9.11 23.43 0.21 -26.96 16 7 H 0.09 4.79 7.30 -2.91 -0.02 4.77 16 8 C 0.02 0.97 5.49 85.18 0.47 1.44 16 9 N -0.83 -50.59 11.92 21.79 0.26 -50.33 16 10 Si 0.99 41.85 29.56 68.60 2.03 43.88 16 11 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 14 N -0.29 -17.97 10.55 -52.51 -0.55 -18.52 16 15 N -0.18 -9.81 13.19 37.02 0.49 -9.32 16 16 N -0.34 -15.20 3.96 -311.28 -1.23 -16.43 16 17 C 0.05 1.57 6.52 44.99 0.29 1.86 16 18 C -0.16 -4.19 10.20 30.62 0.31 -3.88 16 19 C -0.16 -4.17 10.46 30.62 0.32 -3.85 16 20 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 2.68 7.56 -2.38 -0.02 2.66 16 26 H 0.08 2.36 7.89 -2.38 -0.02 2.34 16 27 H 0.27 15.20 8.30 -92.71 -0.77 14.43 16 28 H 0.17 3.89 8.03 -2.39 -0.02 3.87 16 29 H 0.08 2.62 7.86 -2.38 -0.02 2.60 16 30 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.18 278.48 5.28 -70.89 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.10 Total: 14.25 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.19 Total: -34.41 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -1.04 Total: -94.61 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -76.18 5.28 -70.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.443 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds