Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39012 * 126.77093 * 2 1 4 4 C 1.41494 * 126.02361 * 359.97438 * 3 2 1 5 5 H 1.08006 * 119.99581 * 0.02562 * 4 3 2 6 6 C 1.39732 * 120.00543 * 180.02562 * 4 3 2 7 7 N 1.30989 * 119.99963 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00568 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47295 * 89.99922 * 8 6 4 10 10 H 1.48494 * 109.47120 * 210.00270 * 8 6 4 11 11 H 1.48501 * 109.46664 * 330.00024 * 8 6 4 12 12 N 1.34840 * 107.95743 * 179.97438 * 3 2 1 13 13 N 1.28663 * 109.63575 * 359.97438 * 12 3 2 14 14 N 1.35014 * 126.77349 * 179.68217 * 2 1 3 15 15 C 1.46506 * 126.49236 * 359.97438 * 14 2 1 16 16 H 1.09000 * 109.46993 * 359.97438 * 15 14 2 17 17 C 1.52991 * 109.47080 * 119.99929 * 15 14 2 18 18 C 1.53003 * 109.46754 * 240.00180 * 15 14 2 19 19 C 1.52997 * 117.49685 * 128.62457 * 18 15 14 20 20 C 1.52998 * 117.50505 * 60.00013 * 18 15 14 21 21 H 1.09002 * 109.47152 * 90.02667 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02767 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02748 * 1 2 3 24 24 H 0.96997 * 120.00592 * 179.97438 * 7 6 4 25 25 H 1.09007 * 109.46815 * 180.02562 * 17 15 14 26 26 H 1.09001 * 109.47267 * 299.99815 * 17 15 14 27 27 H 1.08992 * 109.47618 * 60.00172 * 17 15 14 28 28 H 1.08997 * 115.54574 * 274.31975 * 18 15 14 29 29 H 1.09003 * 117.50429 * 359.97438 * 19 18 15 30 30 H 1.09003 * 117.49884 * 145.01516 * 19 18 15 31 31 H 1.08998 * 117.50010 * 214.98305 * 20 18 15 32 32 H 1.09004 * 117.49586 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3392 1.1135 0.0000 4 6 1.9206 2.4652 -0.0005 5 1 0.8674 2.7043 -0.0005 6 6 2.8698 3.4906 -0.0010 7 7 4.1472 3.2006 -0.0015 8 14 2.3173 5.2750 -0.0009 9 1 2.1714 5.7480 1.3991 10 1 3.3288 6.1064 -0.7015 11 1 1.0124 5.3890 -0.7005 12 7 3.6155 0.6787 0.0006 13 7 3.6340 -0.6078 0.0015 14 7 2.3153 -1.0815 0.0060 15 6 1.8935 -2.4844 0.0143 16 1 0.8047 -2.5365 0.0155 17 6 2.4368 -3.1877 -1.2310 18 6 2.4378 -3.1732 1.2675 19 6 1.4447 -3.9493 2.1347 20 6 2.0072 -2.6135 2.6247 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 4.8062 3.9124 -0.0022 25 1 2.1226 -4.2315 -1.2250 26 1 2.0490 -2.6970 -2.1237 27 1 3.5255 -3.1357 -1.2318 28 1 3.4500 -3.5687 1.1843 29 1 0.4034 -3.9690 1.8128 30 1 1.8035 -4.8557 2.6223 31 1 2.7361 -2.6410 3.4347 32 1 1.3364 -1.7543 2.6250 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = 103.056931 kcal Electronic energy + Delta-G solvation = -15102.714834 eV Core-core repulsion = 12679.841698 eV Total energy + Delta-G solvation = -2422.873136 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00161 -37.51303 -33.66110 -32.85810 -31.22784 -29.14042 -26.87702 -24.40333 -23.84277 -22.18825 -21.41692 -19.56588 -18.80927 -16.89267 -15.67429 -14.91414 -14.84621 -14.58989 -13.84701 -13.15085 -12.57948 -12.46374 -12.32060 -12.07963 -11.85822 -11.52082 -11.43181 -11.10464 -10.97340 -10.87938 -10.59464 -10.27261 -10.15267 -9.96209 -9.60092 -9.22122 -8.77934 -8.32487 -7.29156 -6.29803 -4.08389 2.91119 3.20783 3.24048 3.27026 3.49690 4.15967 4.20697 4.39590 4.66020 5.04638 5.12498 5.23946 5.48355 5.59839 5.62629 5.69773 5.77605 5.95857 6.05750 6.10202 6.10518 6.20945 6.32105 6.36391 6.44097 6.65352 7.00338 7.24736 7.50792 7.60411 8.27654 8.49710 8.91442 9.16231 10.32156 10.67259 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044084 B = 0.007722 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.991735 B = 3624.934263 C = 3717.091706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.122 4.122 3 C 0.151 3.849 4 C -0.452 4.452 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.778 5.778 8 Si 0.905 3.095 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.266 1.266 12 N -0.231 5.231 13 N -0.127 5.127 14 N -0.367 5.367 15 C 0.193 3.807 16 H 0.088 0.912 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.177 4.177 20 C -0.165 4.165 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.271 0.729 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -9.755 1.428 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.253 4.253 3 C 0.021 3.979 4 C -0.489 4.489 5 H 0.097 0.903 6 C -0.146 4.146 7 N -0.405 5.405 8 Si 0.731 3.269 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.103 5.103 13 N -0.103 5.103 14 N -0.164 5.164 15 C 0.089 3.911 16 H 0.105 0.895 17 C -0.211 4.211 18 C -0.175 4.175 19 C -0.215 4.215 20 C -0.202 4.202 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.882 -10.062 1.412 11.273 hybrid contribution -1.272 1.038 0.035 1.642 sum -6.154 -9.024 1.447 11.018 Atomic orbital electron populations 1.19789 0.89084 1.00991 1.00473 1.21461 0.93499 0.87580 1.22769 1.18971 0.86037 0.93271 0.99603 1.18515 0.93770 0.87696 1.48874 0.90265 1.25766 0.94620 1.00560 0.93618 1.70023 1.00724 1.33619 1.36104 0.86379 0.79151 0.82665 0.78739 1.19899 1.20578 1.18981 1.75091 1.20106 0.99702 1.15399 1.81431 0.96976 1.06966 1.24965 1.49534 1.06773 1.04192 1.55879 1.20477 0.98153 0.78545 0.93946 0.89452 1.22051 1.02809 0.99563 0.96707 1.22567 0.99714 1.03465 0.91772 1.23002 0.98554 0.95790 1.04129 1.22819 1.03568 0.96739 0.97119 0.93163 0.91056 0.94128 0.91886 0.91560 0.92260 0.91253 0.87280 0.88928 0.88830 0.88954 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.82 9.78 36.01 0.35 -0.47 16 2 C -0.12 -2.91 7.11 -80.90 -0.58 -3.48 16 3 C 0.15 4.28 6.72 -85.02 -0.57 3.71 16 4 C -0.45 -12.63 9.11 -37.78 -0.34 -12.98 16 5 H 0.08 2.05 7.30 -52.48 -0.38 1.66 16 6 C 0.07 1.99 5.49 -17.35 -0.10 1.89 16 7 N -0.78 -22.59 11.92 55.54 0.66 -21.93 16 8 Si 0.91 20.00 29.56 -169.99 -5.02 14.97 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 N -0.23 -6.88 10.55 32.05 0.34 -6.54 16 13 N -0.13 -3.37 13.62 60.35 0.82 -2.55 16 14 N -0.37 -8.19 3.17 -49.74 -0.16 -8.35 16 15 C 0.19 3.22 3.26 -67.93 -0.22 3.00 16 16 H 0.09 1.31 6.55 -51.93 -0.34 0.97 16 17 C -0.15 -2.26 9.44 37.15 0.35 -1.91 16 18 C -0.16 -2.35 5.31 -90.62 -0.48 -2.83 16 19 C -0.18 -2.11 10.18 -26.73 -0.27 -2.38 16 20 C -0.17 -2.50 10.12 -26.73 -0.27 -2.77 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.07 1.32 7.56 -51.93 -0.39 0.92 16 23 H 0.04 0.64 7.19 -51.93 -0.37 0.26 16 24 H 0.27 7.21 8.30 -40.82 -0.34 6.88 16 25 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.11 1.66 8.11 -51.93 -0.42 1.23 16 29 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -32.16 276.72 -5.74 -37.90 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.42 Total: 0.55 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -2.13 Total: -18.22 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 1.66 Total: -39.37 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.16 -5.74 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.954 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds