Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39012 * 126.77093 * 2 1 4 4 C 1.41494 * 126.02361 * 359.97438 * 3 2 1 5 5 H 1.08006 * 119.99581 * 0.02562 * 4 3 2 6 6 C 1.39732 * 120.00543 * 180.02562 * 4 3 2 7 7 N 1.30989 * 119.99963 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00568 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47295 * 89.99922 * 8 6 4 10 10 H 1.48494 * 109.47120 * 210.00270 * 8 6 4 11 11 H 1.48501 * 109.46664 * 330.00024 * 8 6 4 12 12 N 1.34840 * 107.95743 * 179.97438 * 3 2 1 13 13 N 1.28663 * 109.63575 * 359.97438 * 12 3 2 14 14 N 1.35014 * 126.77349 * 179.68217 * 2 1 3 15 15 C 1.46506 * 126.49236 * 359.97438 * 14 2 1 16 16 H 1.09000 * 109.46993 * 359.97438 * 15 14 2 17 17 C 1.52991 * 109.47080 * 119.99929 * 15 14 2 18 18 C 1.53003 * 109.46754 * 240.00180 * 15 14 2 19 19 C 1.52997 * 117.49685 * 128.62457 * 18 15 14 20 20 C 1.52998 * 117.50505 * 60.00013 * 18 15 14 21 21 H 1.09002 * 109.47152 * 90.02667 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02767 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02748 * 1 2 3 24 24 H 0.96997 * 120.00592 * 179.97438 * 7 6 4 25 25 H 1.09007 * 109.46815 * 180.02562 * 17 15 14 26 26 H 1.09001 * 109.47267 * 299.99815 * 17 15 14 27 27 H 1.08992 * 109.47618 * 60.00172 * 17 15 14 28 28 H 1.08997 * 115.54574 * 274.31975 * 18 15 14 29 29 H 1.09003 * 117.50429 * 359.97438 * 19 18 15 30 30 H 1.09003 * 117.49884 * 145.01516 * 19 18 15 31 31 H 1.08998 * 117.50010 * 214.98305 * 20 18 15 32 32 H 1.09004 * 117.49586 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3392 1.1135 0.0000 4 6 1.9206 2.4652 -0.0005 5 1 0.8674 2.7043 -0.0005 6 6 2.8698 3.4906 -0.0010 7 7 4.1472 3.2006 -0.0015 8 14 2.3173 5.2750 -0.0009 9 1 2.1714 5.7480 1.3991 10 1 3.3288 6.1064 -0.7015 11 1 1.0124 5.3890 -0.7005 12 7 3.6155 0.6787 0.0006 13 7 3.6340 -0.6078 0.0015 14 7 2.3153 -1.0815 0.0060 15 6 1.8935 -2.4844 0.0143 16 1 0.8047 -2.5365 0.0155 17 6 2.4368 -3.1877 -1.2310 18 6 2.4378 -3.1732 1.2675 19 6 1.4447 -3.9493 2.1347 20 6 2.0072 -2.6135 2.6247 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 4.8062 3.9124 -0.0022 25 1 2.1226 -4.2315 -1.2250 26 1 2.0490 -2.6970 -2.1237 27 1 3.5255 -3.1357 -1.2318 28 1 3.4500 -3.5687 1.1843 29 1 0.4034 -3.9690 1.8128 30 1 1.8035 -4.8557 2.6223 31 1 2.7361 -2.6410 3.4347 32 1 1.3364 -1.7543 2.6250 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958542645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = 82.134577 kcal Electronic energy + Delta-G solvation = -15103.622096 eV Core-core repulsion = 12679.841698 eV Total energy + Delta-G solvation = -2423.780398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.87410 -38.79617 -35.44377 -34.59442 -32.92541 -30.85968 -28.64933 -26.32790 -25.23738 -23.28981 -22.97036 -21.38253 -20.46349 -18.71772 -17.20040 -16.76095 -16.38236 -15.90788 -15.42716 -14.88871 -14.42711 -13.74663 -13.64651 -13.50008 -13.41258 -13.05295 -12.83734 -12.61422 -12.55542 -12.42444 -12.22916 -11.92935 -11.58933 -11.34836 -11.15317 -11.09218 -10.71838 -10.17491 -9.29074 -8.27635 -6.15445 1.06355 1.43865 1.45958 1.58514 1.95189 2.35029 2.37502 2.96653 3.44483 3.55842 3.85512 3.93383 4.08362 4.23454 4.33302 4.38478 4.49515 4.73438 4.74267 4.79497 4.89840 4.95986 5.03573 5.10471 5.13329 5.21752 5.24342 5.37038 5.57809 5.69249 6.42396 6.53286 6.93760 7.12140 8.35854 8.72354 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044084 B = 0.007722 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.991735 B = 3624.934263 C = 3717.091706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.095 4.095 3 C 0.100 3.900 4 C -0.483 4.483 5 H 0.092 0.908 6 C 0.018 3.982 7 N -0.831 5.831 8 Si 0.986 3.014 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.251 1.251 12 N -0.288 5.288 13 N -0.165 5.165 14 N -0.347 5.347 15 C 0.177 3.823 16 H 0.117 0.883 17 C -0.147 4.147 18 C -0.174 4.174 19 C -0.127 4.127 20 C -0.192 4.192 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.271 0.729 25 H 0.110 0.890 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 -11.414 1.540 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.230 4.230 3 C -0.033 4.033 4 C -0.520 4.520 5 H 0.110 0.890 6 C -0.195 4.195 7 N -0.460 5.460 8 Si 0.808 3.192 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.174 1.174 12 N -0.157 5.157 13 N -0.140 5.140 14 N -0.141 5.141 15 C 0.075 3.925 16 H 0.135 0.865 17 C -0.205 4.205 18 C -0.194 4.194 19 C -0.165 4.165 20 C -0.229 4.229 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.828 -11.799 1.524 14.241 hybrid contribution -0.481 1.289 0.017 1.377 sum -8.310 -10.509 1.541 13.486 Atomic orbital electron populations 1.19990 0.84964 1.02988 1.02419 1.22339 0.95873 0.86895 1.17896 1.19603 0.86688 0.95071 1.01896 1.18932 0.94597 0.88378 1.50084 0.88995 1.26777 0.94392 1.05570 0.92759 1.70200 1.02232 1.35062 1.38474 0.85150 0.79004 0.76105 0.78963 1.19225 1.20421 1.17429 1.75037 1.21725 1.01073 1.17825 1.81298 0.98950 1.06180 1.27580 1.50053 1.05573 1.06395 1.52129 1.21136 0.99977 0.75550 0.95839 0.86514 1.22025 1.01341 1.01879 0.95223 1.22514 1.00764 1.05139 0.90946 1.23143 0.98758 0.94525 1.00029 1.22804 1.04282 0.98605 0.97235 0.90979 0.90844 0.90377 0.91950 0.87128 0.93001 0.93410 0.88000 0.86558 0.86267 0.89345 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.52 9.78 71.24 0.70 -0.82 16 2 C -0.10 -4.46 7.11 42.26 0.30 -4.16 16 3 C 0.10 5.85 6.72 39.67 0.27 6.11 16 4 C -0.48 -27.62 9.11 23.43 0.21 -27.41 16 5 H 0.09 4.76 7.30 -2.91 -0.02 4.74 16 6 C 0.02 1.01 5.49 85.18 0.47 1.48 16 7 N -0.83 -50.74 11.92 21.79 0.26 -50.48 16 8 Si 0.99 41.95 29.56 68.60 2.03 43.98 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 12 N -0.29 -17.97 10.55 -52.52 -0.55 -18.53 16 13 N -0.16 -9.06 13.62 37.02 0.50 -8.55 16 14 N -0.35 -15.29 3.17 -311.28 -0.99 -16.27 16 15 C 0.18 5.42 3.26 44.99 0.15 5.57 16 16 H 0.12 2.92 6.55 -2.39 -0.02 2.90 16 17 C -0.15 -3.97 9.44 71.98 0.68 -3.29 16 18 C -0.17 -4.84 5.31 -10.79 -0.06 -4.90 16 19 C -0.13 -2.44 10.18 30.59 0.31 -2.13 16 20 C -0.19 -5.49 10.12 30.59 0.31 -5.18 16 21 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.07 2.51 7.56 -2.39 -0.02 2.50 16 23 H 0.08 2.08 7.19 -2.38 -0.02 2.06 16 24 H 0.27 15.25 8.30 -92.71 -0.77 14.48 16 25 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 2.97 8.11 -2.39 -0.02 2.96 16 29 H 0.12 1.75 8.05 -2.39 -0.02 1.73 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -75.47 276.72 5.69 -69.78 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.10 Total: 14.81 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 3.34 Total: -34.73 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -0.78 Total: -93.83 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.47 5.69 -69.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.911 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds