Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47336 * 2 1 4 4 C 1.39008 * 126.77191 * 270.02842 * 3 2 1 5 5 C 1.41493 * 126.02063 * 0.02562 * 4 3 2 6 6 H 1.08000 * 120.00508 * 359.71588 * 5 4 3 7 7 C 1.39745 * 120.00153 * 179.71474 * 5 4 3 8 8 N 1.30991 * 119.99647 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00199 * 179.72504 * 7 5 4 10 10 H 1.48498 * 109.47127 * 59.99934 * 9 7 5 11 11 H 1.48497 * 109.47201 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47080 * 300.00040 * 9 7 5 13 13 N 1.34837 * 107.95774 * 179.75641 * 4 3 2 14 14 N 1.28665 * 109.63831 * 0.23954 * 13 4 3 15 15 N 1.35017 * 126.76883 * 90.20089 * 3 2 1 16 16 C 1.46502 * 126.49604 * 0.02562 * 15 3 2 17 17 H 1.08995 * 115.54814 * 334.62749 * 16 15 3 18 18 C 1.52999 * 117.49721 * 188.91259 * 16 15 3 19 19 C 1.53000 * 60.00073 * 252.51479 * 18 16 15 20 20 H 1.09005 * 117.49947 * 252.51141 * 19 18 16 21 21 C 1.52995 * 117.49651 * 107.49356 * 19 18 16 22 22 H 1.09005 * 109.46788 * 300.00212 * 1 2 3 23 23 H 1.08998 * 109.47569 * 59.99421 * 1 2 3 24 24 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47129 * 240.00443 * 2 1 3 26 26 H 1.08996 * 109.47201 * 119.99900 * 2 1 3 27 27 H 0.97000 * 119.99580 * 179.97438 * 8 7 5 28 28 H 1.08995 * 117.49910 * 0.02562 * 18 16 15 29 29 H 1.09004 * 117.49517 * 145.02106 * 18 16 15 30 30 H 1.09003 * 109.47360 * 351.37710 * 21 19 18 31 31 H 1.09002 * 109.47314 * 111.38208 * 21 19 18 32 32 H 1.09003 * 109.47117 * 231.37593 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3093 2.2056 -1.1135 5 6 2.1686 1.8113 -2.4651 6 1 1.8214 0.8171 -2.7043 7 6 2.4790 2.7085 -3.4906 8 7 2.8997 3.9146 -3.2005 9 14 2.3007 2.1855 -5.2749 10 1 0.8890 1.8099 -5.5419 11 1 2.6890 3.3113 -6.1619 12 1 3.1816 1.0196 -5.5395 13 7 2.7298 3.4106 -0.6786 14 7 2.7382 3.4273 0.6079 15 7 2.3054 2.1816 1.0816 16 6 2.1699 1.7820 2.4845 17 1 1.4448 0.9922 2.6804 18 6 2.3353 2.8696 3.5479 19 6 3.4286 1.8171 3.3536 20 1 3.5314 1.0504 4.1217 21 6 4.7323 2.2667 2.6912 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1155 4.5373 -3.9123 28 1 2.5445 3.8824 3.2036 29 1 1.7187 2.7955 4.4437 30 1 4.6159 3.2820 2.3119 31 1 5.5392 2.2427 3.4236 32 1 4.9708 1.5957 1.8659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = 101.474549 kcal Electronic energy + Delta-G solvation = -15168.019966 eV Core-core repulsion = 12745.078212 eV Total energy + Delta-G solvation = -2422.941753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06313 -37.24961 -33.42262 -33.23043 -30.59138 -28.57258 -28.08066 -25.02608 -23.16928 -22.53016 -20.64377 -19.82439 -18.51868 -16.79044 -15.89295 -14.94799 -14.70142 -13.93307 -13.70823 -13.28482 -12.89285 -12.68666 -12.33199 -11.91202 -11.68982 -11.37525 -11.19539 -11.11739 -11.08606 -10.70227 -10.38534 -10.35427 -10.23657 -9.84865 -9.64606 -9.15556 -8.80996 -8.19424 -7.33421 -6.32139 -4.10652 2.78437 3.19211 3.22656 3.24323 3.55887 4.08040 4.17244 4.36149 4.85851 4.97389 5.17471 5.52761 5.55525 5.63823 5.71208 5.84582 5.95637 6.06759 6.11029 6.23423 6.29923 6.32399 6.41904 6.60067 6.69071 6.83635 6.99552 7.20193 7.48470 7.57883 8.24221 8.47188 8.88117 9.13671 10.26694 10.64784 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.009009 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.661534 B = 3107.304037 C = 3593.268050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 C -0.109 4.109 4 C 0.153 3.847 5 C -0.450 4.450 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.778 5.778 9 Si 0.906 3.094 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.269 1.269 13 N -0.229 5.229 14 N -0.132 5.132 15 N -0.346 5.346 16 C 0.095 3.905 17 H 0.127 0.873 18 C -0.169 4.169 19 C -0.157 4.157 20 H 0.107 0.893 21 C -0.118 4.118 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -6.294 8.415 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C -0.240 4.240 4 C 0.023 3.977 5 C -0.487 4.487 6 H 0.098 0.902 7 C -0.146 4.146 8 N -0.405 5.405 9 Si 0.731 3.269 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.100 5.100 14 N -0.107 5.107 15 N -0.140 5.140 16 C -0.012 4.012 17 H 0.145 0.855 18 C -0.207 4.207 19 C -0.177 4.177 20 H 0.125 0.875 21 C -0.175 4.175 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.955 -4.622 8.692 9.891 hybrid contribution -0.500 -1.264 -0.975 1.673 sum -1.454 -5.886 7.717 9.814 Atomic orbital electron populations 1.21745 0.96241 1.00060 1.01997 1.19531 0.94603 0.90475 1.01248 1.21375 1.18861 0.96636 0.87112 1.18938 0.98048 0.87449 0.93273 1.18470 1.42896 0.99690 0.87594 0.90229 1.25772 0.93706 0.94525 1.00592 1.70012 1.32110 1.04549 1.33782 0.86434 0.79312 0.78739 0.82410 1.19374 1.20667 1.19374 1.75087 1.15852 1.19576 0.99517 1.81447 1.22549 0.99669 1.07042 1.48785 1.50027 1.12013 1.03193 1.21523 1.00680 1.01076 0.77900 0.85514 1.23400 1.01768 0.96644 0.98900 1.22805 0.91701 1.01726 1.01492 0.87511 1.21257 0.94132 1.02723 0.99431 0.93946 0.91909 0.93549 0.90535 0.93350 0.91796 0.87249 0.88334 0.91143 0.92878 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 37.16 0.37 -1.99 16 2 C -0.02 -0.35 5.94 -27.88 -0.17 -0.52 16 3 C -0.11 -2.57 6.37 -80.90 -0.52 -3.08 16 4 C 0.15 4.27 6.72 -85.02 -0.57 3.70 16 5 C -0.45 -12.41 9.11 -37.78 -0.34 -12.75 16 6 H 0.08 2.03 7.30 -52.49 -0.38 1.65 16 7 C 0.07 1.96 5.49 -17.35 -0.10 1.87 16 8 N -0.78 -22.37 11.92 55.54 0.66 -21.71 16 9 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 N -0.23 -6.73 10.55 32.05 0.34 -6.39 16 14 N -0.13 -3.44 12.10 60.35 0.73 -2.71 16 15 N -0.35 -7.76 3.43 -49.74 -0.17 -7.93 16 16 C 0.09 1.60 6.49 -67.93 -0.44 1.16 16 17 H 0.13 1.84 8.01 -51.93 -0.42 1.42 16 18 C -0.17 -2.48 9.84 -26.73 -0.26 -2.74 16 19 C -0.16 -2.29 6.41 -90.62 -0.58 -2.87 16 20 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 21 C -0.12 -1.93 9.40 37.16 0.35 -1.58 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.44 7.56 -51.93 -0.39 1.05 16 26 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16 27 H 0.27 7.20 8.30 -40.82 -0.34 6.86 16 28 H 0.11 1.84 7.76 -51.93 -0.40 1.43 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.32 7.13 -51.93 -0.37 0.95 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -31.56 275.47 -6.04 -37.60 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.47 Total: 0.95 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.26 Total: -18.81 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 1.56 Total: -38.73 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.56 -6.04 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.079 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds