Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47336 * 2 1 4 4 C 1.39008 * 126.77191 * 270.02842 * 3 2 1 5 5 C 1.41493 * 126.02063 * 0.02562 * 4 3 2 6 6 H 1.08000 * 120.00508 * 359.71588 * 5 4 3 7 7 C 1.39745 * 120.00153 * 179.71474 * 5 4 3 8 8 N 1.30991 * 119.99647 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00199 * 179.72504 * 7 5 4 10 10 H 1.48498 * 109.47127 * 59.99934 * 9 7 5 11 11 H 1.48497 * 109.47201 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47080 * 300.00040 * 9 7 5 13 13 N 1.34837 * 107.95774 * 179.75641 * 4 3 2 14 14 N 1.28665 * 109.63831 * 0.23954 * 13 4 3 15 15 N 1.35017 * 126.76883 * 90.20089 * 3 2 1 16 16 C 1.46502 * 126.49604 * 0.02562 * 15 3 2 17 17 H 1.08995 * 115.54814 * 334.62749 * 16 15 3 18 18 C 1.52999 * 117.49721 * 188.91259 * 16 15 3 19 19 C 1.53000 * 60.00073 * 252.51479 * 18 16 15 20 20 H 1.09005 * 117.49947 * 252.51141 * 19 18 16 21 21 C 1.52995 * 117.49651 * 107.49356 * 19 18 16 22 22 H 1.09005 * 109.46788 * 300.00212 * 1 2 3 23 23 H 1.08998 * 109.47569 * 59.99421 * 1 2 3 24 24 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47129 * 240.00443 * 2 1 3 26 26 H 1.08996 * 109.47201 * 119.99900 * 2 1 3 27 27 H 0.97000 * 119.99580 * 179.97438 * 8 7 5 28 28 H 1.08995 * 117.49910 * 0.02562 * 18 16 15 29 29 H 1.09004 * 117.49517 * 145.02106 * 18 16 15 30 30 H 1.09003 * 109.47360 * 351.37710 * 21 19 18 31 31 H 1.09002 * 109.47314 * 111.38208 * 21 19 18 32 32 H 1.09003 * 109.47117 * 231.37593 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3093 2.2056 -1.1135 5 6 2.1686 1.8113 -2.4651 6 1 1.8214 0.8171 -2.7043 7 6 2.4790 2.7085 -3.4906 8 7 2.8997 3.9146 -3.2005 9 14 2.3007 2.1855 -5.2749 10 1 0.8890 1.8099 -5.5419 11 1 2.6890 3.3113 -6.1619 12 1 3.1816 1.0196 -5.5395 13 7 2.7298 3.4106 -0.6786 14 7 2.7382 3.4273 0.6079 15 7 2.3054 2.1816 1.0816 16 6 2.1699 1.7820 2.4845 17 1 1.4448 0.9922 2.6804 18 6 2.3353 2.8696 3.5479 19 6 3.4286 1.8171 3.3536 20 1 3.5314 1.0504 4.1217 21 6 4.7323 2.2667 2.6912 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1155 4.5373 -3.9123 28 1 2.5445 3.8824 3.2036 29 1 1.7187 2.7955 4.4437 30 1 4.6159 3.2820 2.3119 31 1 5.5392 2.2427 3.4236 32 1 4.9708 1.5957 1.8659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = 80.995432 kcal Electronic energy + Delta-G solvation = -15168.908007 eV Core-core repulsion = 12745.078212 eV Total energy + Delta-G solvation = -2423.829795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.91501 -38.62671 -35.26733 -34.96057 -32.35968 -30.41814 -29.43791 -26.93723 -24.81057 -24.05835 -21.93924 -21.70850 -20.16154 -18.63851 -17.30310 -16.82848 -16.30025 -15.59851 -15.27876 -14.86096 -14.54681 -14.14234 -13.72996 -13.33677 -13.25180 -12.95638 -12.85823 -12.83009 -12.44561 -12.32402 -12.06499 -11.92737 -11.79003 -11.51704 -11.18102 -11.01623 -10.69894 -9.90157 -9.30910 -8.28379 -6.15844 0.98917 1.43116 1.46240 1.55867 1.95324 2.34410 2.35544 2.78554 3.54494 3.55292 3.73128 3.94081 4.11346 4.26868 4.39981 4.55850 4.62932 4.77032 4.82925 4.85334 4.86951 4.94446 5.08201 5.12851 5.19682 5.32499 5.40314 5.46669 5.56728 5.70021 6.41549 6.52256 6.92379 7.11408 8.32948 8.71273 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.009009 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.661534 B = 3107.304037 C = 3593.268050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 C -0.081 4.081 4 C 0.103 3.897 5 C -0.480 4.480 6 H 0.091 0.909 7 C 0.018 3.982 8 N -0.830 5.830 9 Si 0.985 3.015 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.258 1.258 13 N -0.287 5.287 14 N -0.166 5.166 15 N -0.329 5.329 16 C 0.051 3.949 17 H 0.163 0.837 18 C -0.156 4.156 19 C -0.136 4.136 20 H 0.155 0.845 21 C -0.120 4.120 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.271 0.729 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -9.179 10.342 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.216 4.216 4 C -0.030 4.030 5 C -0.516 4.516 6 H 0.109 0.891 7 C -0.195 4.195 8 N -0.459 5.459 9 Si 0.806 3.194 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.183 1.183 13 N -0.156 5.156 14 N -0.141 5.141 15 N -0.121 5.121 16 C -0.053 4.053 17 H 0.181 0.819 18 C -0.194 4.194 19 C -0.155 4.155 20 H 0.173 0.827 21 C -0.177 4.177 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.161 0.839 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.927 -7.486 10.694 13.195 hybrid contribution -0.203 -0.481 -1.295 1.397 sum -2.130 -7.967 9.398 12.503 Atomic orbital electron populations 1.21661 0.94124 1.02394 1.01019 1.19773 0.96226 0.87153 1.02883 1.22234 1.14811 0.98118 0.86400 1.19558 1.00126 0.88275 0.95052 1.18857 1.44016 1.00478 0.88276 0.89104 1.26772 0.92957 0.94240 1.05530 1.70193 1.34482 1.06119 1.35116 0.85224 0.79752 0.78367 0.76012 1.18233 1.20521 1.18265 1.75029 1.18326 1.21278 1.00952 1.81326 1.24999 1.01550 1.06205 1.49219 1.46725 1.10683 1.05521 1.22341 1.03947 1.03720 0.75249 0.81938 1.23481 1.02106 0.94689 0.99076 1.22955 0.89422 1.02469 1.00697 0.82733 1.21248 0.96849 0.99999 0.99599 0.93310 0.94562 0.89523 0.90705 0.89840 0.91946 0.90226 0.83883 0.94591 0.89572 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.89 71.98 0.71 -3.30 16 2 C -0.02 -0.72 5.94 29.85 0.18 -0.54 16 3 C -0.08 -3.79 6.37 42.26 0.27 -3.52 16 4 C 0.10 5.97 6.72 39.67 0.27 6.24 16 5 C -0.48 -27.33 9.11 23.44 0.21 -27.12 16 6 H 0.09 4.71 7.30 -2.91 -0.02 4.69 16 7 C 0.02 1.01 5.49 85.18 0.47 1.48 16 8 N -0.83 -50.57 11.92 21.80 0.26 -50.31 16 9 Si 0.99 41.93 29.56 68.60 2.03 43.96 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 13 N -0.29 -17.88 10.55 -52.52 -0.55 -18.43 16 14 N -0.17 -9.07 12.10 37.02 0.45 -8.62 16 15 N -0.33 -14.64 3.43 -311.28 -1.07 -15.71 16 16 C 0.05 1.57 6.49 44.99 0.29 1.86 16 17 H 0.16 3.84 8.01 -2.39 -0.02 3.82 16 18 C -0.16 -4.08 9.84 30.59 0.30 -3.78 16 19 C -0.14 -3.44 6.41 -10.79 -0.07 -3.51 16 20 H 0.16 2.58 8.14 -2.38 -0.02 2.56 16 21 C -0.12 -3.78 9.40 71.98 0.68 -3.11 16 22 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.66 7.56 -2.39 -0.02 2.64 16 26 H 0.08 2.34 7.87 -2.39 -0.02 2.32 16 27 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 28 H 0.08 2.63 7.76 -2.39 -0.02 2.61 16 29 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.03 1.37 7.13 -2.39 -0.02 1.36 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -75.63 275.47 5.52 -70.11 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.10 Total: 14.29 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 3.31 Total: -35.28 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -0.91 Total: -93.08 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.63 5.52 -70.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.104 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds