Wall clock time and date at job start Mon Mar 30 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47043 * 2 1 4 4 C 1.39014 * 126.76861 * 270.13241 * 3 2 1 5 5 C 1.41490 * 126.02578 * 0.03469 * 4 3 2 6 6 H 1.08002 * 120.00046 * 0.24958 * 5 4 3 7 7 C 1.39740 * 120.00292 * 180.25061 * 5 4 3 8 8 N 1.30984 * 119.99620 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00212 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47196 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47095 * 119.99588 * 9 7 5 12 12 H 1.48496 * 109.47422 * 240.00033 * 9 7 5 13 13 N 1.34847 * 107.95420 * 180.26912 * 4 3 2 14 14 N 1.28664 * 109.63567 * 359.75934 * 13 4 3 15 15 N 1.35016 * 126.76872 * 89.99895 * 3 2 1 16 16 C 1.46494 * 126.49663 * 0.02562 * 15 3 2 17 17 H 1.09002 * 115.55041 * 25.29461 * 16 15 3 18 18 C 1.53005 * 117.49767 * 170.96436 * 16 15 3 19 19 C 1.52999 * 117.51777 * 239.59472 * 16 15 3 20 20 H 1.09003 * 117.50034 * 0.02562 * 19 16 15 21 21 C 1.52994 * 117.50151 * 145.02764 * 19 16 15 22 22 H 1.08998 * 109.47086 * 60.00228 * 1 2 3 23 23 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47155 * 300.00102 * 1 2 3 25 25 H 1.08999 * 109.46789 * 240.00060 * 2 1 3 26 26 H 1.08998 * 109.47086 * 119.99772 * 2 1 3 27 27 H 0.96998 * 119.99344 * 180.02562 * 8 7 5 28 28 H 1.09004 * 117.49360 * 215.00172 * 18 16 15 29 29 H 1.08995 * 117.49694 * 359.97438 * 18 16 15 30 30 H 1.09008 * 109.47363 * 59.99783 * 21 19 16 31 31 H 1.08996 * 109.47655 * 179.97438 * 21 19 16 32 32 H 1.09002 * 109.47392 * 300.00024 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3073 2.2062 -1.1136 5 6 2.1642 1.8129 -2.4652 6 1 1.8082 0.8217 -2.7043 7 6 2.4835 2.7069 -3.4906 8 7 2.9147 3.9092 -3.2005 9 14 2.2952 2.1874 -5.2750 10 1 1.7939 0.7907 -5.3336 11 1 1.3293 3.0883 -5.9536 12 1 3.6121 2.2701 -5.9562 13 7 2.7394 3.4073 -0.6787 14 7 2.7470 3.4242 0.6078 15 7 2.3017 2.1828 1.0816 16 6 2.1616 1.7850 2.4845 17 1 2.2293 0.7145 2.6786 18 6 2.7225 2.7324 3.5469 19 6 1.2095 2.6028 3.3594 20 1 0.6868 3.4369 2.8912 21 6 0.4253 1.8555 4.4399 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1360 4.5299 -3.9124 28 1 3.1592 2.2852 4.4399 29 1 3.1961 3.6515 3.2019 30 1 1.1214 1.3845 5.1340 31 1 -0.2073 2.5586 4.9816 32 1 -0.1966 1.0910 3.9742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:16 Heat of formation + Delta-G solvation = 99.608343 kcal Electronic energy + Delta-G solvation = -15002.440799 eV Core-core repulsion = 12579.418121 eV Total energy + Delta-G solvation = -2423.022678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04269 -37.31676 -33.42333 -33.26251 -30.87299 -28.57864 -28.05637 -24.97461 -23.17640 -22.56729 -20.68343 -19.74858 -18.83945 -17.02529 -15.73801 -14.90629 -14.39130 -13.87134 -13.68757 -13.50174 -13.17686 -12.95731 -12.51609 -11.98622 -11.70420 -11.36484 -11.26411 -11.15155 -11.12120 -10.65112 -10.49191 -10.35665 -10.23892 -9.94399 -9.63577 -9.18041 -8.83594 -8.20800 -7.35024 -6.32990 -4.11638 2.76801 3.16415 3.23052 3.26988 3.53498 4.04475 4.16837 4.34942 4.85150 4.97139 5.03560 5.38304 5.54517 5.64619 5.70633 5.71610 5.78364 5.86855 6.05211 6.08406 6.17927 6.31328 6.42059 6.44085 6.60324 6.84274 6.98452 7.18164 7.47359 7.56867 8.22465 8.47230 8.87043 9.13053 10.24958 10.64123 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041919 B = 0.008144 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.800234 B = 3437.400282 C = 3914.610157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.018 4.018 3 C -0.108 4.108 4 C 0.152 3.848 5 C -0.450 4.450 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.778 5.778 9 Si 0.906 3.094 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.277 1.277 13 N -0.228 5.228 14 N -0.135 5.135 15 N -0.350 5.350 16 C 0.098 3.902 17 H 0.128 0.872 18 C -0.167 4.167 19 C -0.159 4.159 20 H 0.107 0.893 21 C -0.118 4.118 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.271 0.729 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -6.504 9.208 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 C -0.239 4.239 4 C 0.022 3.978 5 C -0.486 4.486 6 H 0.099 0.901 7 C -0.146 4.146 8 N -0.405 5.405 9 Si 0.731 3.269 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.099 5.099 14 N -0.110 5.110 15 N -0.144 5.144 16 C -0.008 4.008 17 H 0.145 0.855 18 C -0.205 4.205 19 C -0.180 4.180 20 H 0.125 0.875 21 C -0.175 4.175 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.105 -4.853 9.490 11.102 hybrid contribution -0.408 -1.148 -1.037 1.600 sum -3.513 -6.001 8.453 10.946 Atomic orbital electron populations 1.21733 0.96141 1.00053 1.02057 1.19531 0.94738 0.90348 1.01132 1.21405 1.18774 0.96630 0.87102 1.18979 0.98038 0.87442 0.93347 1.18552 1.42419 1.00076 0.87534 0.90070 1.25782 0.93683 0.94510 1.00665 1.70031 1.32050 1.04783 1.33607 0.86312 0.78336 0.79520 0.82734 1.18760 1.20290 1.20275 1.75086 1.15784 1.19592 0.99467 1.81472 1.22439 0.99999 1.07135 1.48885 1.49743 1.12405 1.03355 1.21520 1.05399 0.96285 0.77612 0.85479 1.23406 0.95822 1.02240 0.99014 1.22841 0.92493 1.02345 1.00296 0.87475 1.21345 0.99599 0.99742 0.96858 0.91976 0.93578 0.93769 0.90513 0.93471 0.91881 0.88196 0.87320 0.92508 0.92083 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.90 37.16 0.37 -2.00 16 2 C -0.02 -0.33 5.99 -27.88 -0.17 -0.50 16 3 C -0.11 -2.58 6.37 -80.90 -0.51 -3.09 16 4 C 0.15 4.29 6.72 -85.02 -0.57 3.72 16 5 C -0.45 -12.46 9.11 -37.78 -0.34 -12.80 16 6 H 0.08 2.09 7.31 -52.49 -0.38 1.70 16 7 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 8 N -0.78 -22.51 11.92 55.54 0.66 -21.85 16 9 Si 0.91 19.89 29.56 -169.99 -5.02 14.86 16 10 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.23 -6.80 10.55 32.05 0.34 -6.46 16 14 N -0.14 -3.62 13.19 60.35 0.80 -2.82 16 15 N -0.35 -8.01 3.96 -49.74 -0.20 -8.20 16 16 C 0.10 1.67 6.38 -67.93 -0.43 1.24 16 17 H 0.13 1.87 7.43 -51.93 -0.39 1.48 16 18 C -0.17 -2.46 9.84 -26.73 -0.26 -2.72 16 19 C -0.16 -2.34 6.33 -90.62 -0.57 -2.91 16 20 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 21 C -0.12 -1.28 10.19 37.15 0.38 -0.90 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.45 7.57 -51.93 -0.39 1.05 16 26 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 27 H 0.27 7.17 8.30 -40.82 -0.34 6.83 16 28 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.11 1.83 7.86 -51.93 -0.41 1.43 16 30 H 0.06 0.53 7.90 -51.92 -0.41 0.12 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -32.19 277.46 -5.91 -38.10 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.45 Total: 0.31 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.22 Total: -18.11 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 1.60 Total: -39.34 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.19 -5.91 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.708 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds