Wall clock time and date at job start Mon Mar 30 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47043 * 2 1 4 4 C 1.39014 * 126.76861 * 270.13241 * 3 2 1 5 5 C 1.41490 * 126.02578 * 0.03469 * 4 3 2 6 6 H 1.08002 * 120.00046 * 0.24958 * 5 4 3 7 7 C 1.39740 * 120.00292 * 180.25061 * 5 4 3 8 8 N 1.30984 * 119.99620 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00212 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47196 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47095 * 119.99588 * 9 7 5 12 12 H 1.48496 * 109.47422 * 240.00033 * 9 7 5 13 13 N 1.34847 * 107.95420 * 180.26912 * 4 3 2 14 14 N 1.28664 * 109.63567 * 359.75934 * 13 4 3 15 15 N 1.35016 * 126.76872 * 89.99895 * 3 2 1 16 16 C 1.46494 * 126.49663 * 0.02562 * 15 3 2 17 17 H 1.09002 * 115.55041 * 25.29461 * 16 15 3 18 18 C 1.53005 * 117.49767 * 170.96436 * 16 15 3 19 19 C 1.52999 * 117.51777 * 239.59472 * 16 15 3 20 20 H 1.09003 * 117.50034 * 0.02562 * 19 16 15 21 21 C 1.52994 * 117.50151 * 145.02764 * 19 16 15 22 22 H 1.08998 * 109.47086 * 60.00228 * 1 2 3 23 23 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47155 * 300.00102 * 1 2 3 25 25 H 1.08999 * 109.46789 * 240.00060 * 2 1 3 26 26 H 1.08998 * 109.47086 * 119.99772 * 2 1 3 27 27 H 0.96998 * 119.99344 * 180.02562 * 8 7 5 28 28 H 1.09004 * 117.49360 * 215.00172 * 18 16 15 29 29 H 1.08995 * 117.49694 * 359.97438 * 18 16 15 30 30 H 1.09008 * 109.47363 * 59.99783 * 21 19 16 31 31 H 1.08996 * 109.47655 * 179.97438 * 21 19 16 32 32 H 1.09002 * 109.47392 * 300.00024 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3073 2.2062 -1.1136 5 6 2.1642 1.8129 -2.4652 6 1 1.8082 0.8217 -2.7043 7 6 2.4835 2.7069 -3.4906 8 7 2.9147 3.9092 -3.2005 9 14 2.2952 2.1874 -5.2750 10 1 1.7939 0.7907 -5.3336 11 1 1.3293 3.0883 -5.9536 12 1 3.6121 2.2701 -5.9562 13 7 2.7394 3.4073 -0.6787 14 7 2.7470 3.4242 0.6078 15 7 2.3017 2.1828 1.0816 16 6 2.1616 1.7850 2.4845 17 1 2.2293 0.7145 2.6786 18 6 2.7225 2.7324 3.5469 19 6 1.2095 2.6028 3.3594 20 1 0.6868 3.4369 2.8912 21 6 0.4253 1.8555 4.4399 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1360 4.5299 -3.9124 28 1 3.1592 2.2852 4.4399 29 1 3.1961 3.6515 3.2019 30 1 1.1214 1.3845 5.1340 31 1 -0.2073 2.5586 4.9816 32 1 -0.1966 1.0910 3.9742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:16 Heat of formation + Delta-G solvation = 78.382263 kcal Electronic energy + Delta-G solvation = -15003.361231 eV Core-core repulsion = 12579.418121 eV Total energy + Delta-G solvation = -2423.943110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.93272 -38.66716 -35.30643 -34.98194 -32.59255 -30.44488 -29.15636 -26.89170 -24.84134 -24.12159 -21.97248 -21.54833 -20.49772 -18.87300 -17.40196 -16.80075 -16.00153 -15.41789 -15.09083 -15.00048 -14.78111 -14.15152 -13.83346 -13.33101 -13.10895 -12.93723 -12.93255 -12.83927 -12.44832 -12.30064 -12.06886 -11.96634 -11.80075 -11.51597 -11.20956 -11.06344 -10.76513 -9.93580 -9.35342 -8.30281 -6.18573 0.93995 1.42712 1.43354 1.59449 1.90371 2.32528 2.33758 2.75512 3.51690 3.53433 3.79393 3.81470 4.10565 4.25934 4.33708 4.54308 4.61662 4.79583 4.85217 4.87264 4.94178 5.01577 5.11783 5.15396 5.17632 5.29034 5.38865 5.46622 5.54546 5.67181 6.40269 6.47362 6.89403 7.09428 8.28038 8.69992 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041919 B = 0.008144 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.800234 B = 3437.400282 C = 3914.610157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 C -0.078 4.078 4 C 0.102 3.898 5 C -0.478 4.478 6 H 0.093 0.907 7 C 0.017 3.983 8 N -0.832 5.832 9 Si 0.987 3.013 10 H -0.247 1.247 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.286 5.286 14 N -0.177 5.177 15 N -0.335 5.335 16 C 0.058 3.942 17 H 0.164 0.836 18 C -0.155 4.155 19 C -0.142 4.142 20 H 0.075 0.925 21 C -0.111 4.111 22 H 0.035 0.965 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.271 0.729 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 -9.548 10.890 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 C -0.213 4.213 4 C -0.031 4.031 5 C -0.515 4.515 6 H 0.111 0.889 7 C -0.196 4.196 8 N -0.461 5.461 9 Si 0.808 3.192 10 H -0.170 1.170 11 H -0.200 1.200 12 H -0.199 1.199 13 N -0.154 5.154 14 N -0.151 5.151 15 N -0.127 5.127 16 C -0.045 4.045 17 H 0.181 0.819 18 C -0.193 4.193 19 C -0.162 4.162 20 H 0.093 0.907 21 C -0.168 4.168 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.206 -7.873 11.252 14.362 hybrid contribution -0.111 -0.308 -1.292 1.332 sum -4.316 -8.181 9.961 13.593 Atomic orbital electron populations 1.21648 0.94110 1.02423 1.00939 1.19797 0.96294 0.86917 1.02992 1.22313 1.14535 0.98184 0.86313 1.19626 1.00080 0.88213 0.95187 1.18939 1.43504 1.00901 0.88122 0.88867 1.26804 0.92886 0.94196 1.05694 1.70205 1.34336 1.06413 1.35099 0.85088 0.78272 0.79704 0.76108 1.16992 1.19995 1.19919 1.75026 1.18243 1.21355 1.00789 1.81339 1.25271 1.02082 1.06432 1.49353 1.46469 1.11093 1.05766 1.22323 1.08663 0.98665 0.74894 0.81918 1.23505 0.96096 1.00475 0.99198 1.22855 0.92673 1.00781 0.99926 0.90657 1.21374 0.99825 0.99795 0.95782 0.94587 0.89417 0.93457 0.90455 0.89731 0.91885 0.83832 0.90251 0.89948 0.90909 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.90 71.98 0.71 -3.31 16 2 C -0.02 -0.71 5.99 29.85 0.18 -0.53 16 3 C -0.08 -3.71 6.37 42.26 0.27 -3.44 16 4 C 0.10 5.97 6.72 39.67 0.27 6.24 16 5 C -0.48 -27.28 9.11 23.43 0.21 -27.06 16 6 H 0.09 4.84 7.31 -2.91 -0.02 4.81 16 7 C 0.02 0.96 5.49 85.18 0.47 1.43 16 8 N -0.83 -50.82 11.92 21.80 0.26 -50.56 16 9 Si 0.99 41.86 29.56 68.60 2.03 43.88 16 10 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 N -0.29 -18.04 10.55 -52.51 -0.55 -18.59 16 14 N -0.18 -9.92 13.19 37.02 0.49 -9.43 16 15 N -0.33 -15.29 3.96 -311.28 -1.23 -16.52 16 16 C 0.06 1.84 6.38 44.99 0.29 2.13 16 17 H 0.16 3.98 7.43 -2.39 -0.02 3.97 16 18 C -0.16 -4.23 9.84 30.60 0.30 -3.93 16 19 C -0.14 -3.84 6.33 -10.79 -0.07 -3.91 16 20 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 21 C -0.11 -1.89 10.19 71.98 0.73 -1.16 16 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 2.72 7.57 -2.39 -0.02 2.70 16 26 H 0.08 2.33 7.38 -2.39 -0.02 2.31 16 27 H 0.27 15.24 8.30 -92.71 -0.77 14.47 16 28 H 0.14 2.66 8.05 -2.38 -0.02 2.64 16 29 H 0.08 2.69 7.86 -2.39 -0.02 2.67 16 30 H 0.08 1.04 7.90 -2.38 -0.02 1.02 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.56 277.46 5.45 -71.10 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.10 Total: 13.67 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.36 Total: -33.55 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -1.04 Total: -95.10 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -76.56 5.45 -71.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.485 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds