Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46834 * 2 1 4 4 N 1.46495 * 109.47040 * 180.02562 * 3 2 1 5 5 N 1.40129 * 126.49555 * 90.02138 * 4 3 2 6 6 N 1.28676 * 108.93530 * 179.73312 * 5 4 3 7 7 C 1.34840 * 109.63394 * 0.02562 * 6 5 4 8 8 C 1.41489 * 126.01900 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00188 * 174.00962 * 8 7 6 10 10 C 1.39734 * 120.00136 * 354.01126 * 8 7 6 11 11 N 1.30988 * 119.99950 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47577 * 90.00052 * 12 10 8 14 14 H 1.48501 * 109.47048 * 210.00088 * 12 10 8 15 15 H 1.48499 * 109.47284 * 329.99903 * 12 10 8 16 16 C 1.35023 * 126.49293 * 269.70680 * 4 3 2 17 17 C 1.50706 * 126.76478 * 0.24647 * 16 4 3 18 18 C 1.52998 * 117.49756 * 311.25567 * 17 16 4 19 19 C 1.52994 * 60.00231 * 252.51491 * 18 17 16 20 20 H 1.09006 * 109.47433 * 60.00227 * 1 2 3 21 21 H 1.09001 * 109.46819 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47541 * 300.00164 * 1 2 3 23 23 H 1.08998 * 109.46907 * 239.99863 * 2 1 3 24 24 H 1.08998 * 109.47135 * 119.99875 * 2 1 3 25 25 H 1.08996 * 109.47430 * 59.99669 * 3 2 1 26 26 H 1.09006 * 109.46925 * 300.00084 * 3 2 1 27 27 H 0.97001 * 119.99919 * 180.02562 * 11 10 8 28 28 H 1.08999 * 115.54705 * 96.97454 * 17 16 4 29 29 H 1.08992 * 117.50317 * 0.02562 * 18 17 16 30 30 H 1.09009 * 117.49244 * 145.02567 * 18 17 16 31 31 H 1.09004 * 117.50433 * 252.51237 * 19 18 17 32 32 H 1.09007 * 117.49677 * 107.49249 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.3378 1.4432 -1.1275 6 7 5.5648 1.4487 -0.7398 7 6 5.6141 1.4513 0.6077 8 6 6.7882 1.4569 1.3973 9 1 6.7169 1.5562 2.4704 10 6 8.0400 1.3338 0.7888 11 7 8.1266 1.2139 -0.5127 12 14 9.5901 1.3419 1.8311 13 1 9.9246 -0.0484 2.2317 14 1 10.7125 1.9139 1.0448 15 1 9.3658 2.1665 3.0456 16 6 4.3083 1.4480 1.0845 17 6 3.8748 1.4500 2.5279 18 6 2.8110 2.4675 2.9445 19 6 4.2648 2.6587 3.3809 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6765 1.9564 0.8899 26 1 1.6765 1.9563 -0.8900 27 1 8.9956 1.1281 -0.9351 28 1 3.8574 0.4749 3.0148 29 1 2.4243 3.1352 2.1748 30 1 2.0931 2.1619 3.7058 31 1 4.5036 2.4790 4.4292 32 1 4.8349 3.4526 2.8982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = 80.647982 kcal Electronic energy + Delta-G solvation = -15056.728723 eV Core-core repulsion = 12632.883862 eV Total energy + Delta-G solvation = -2423.844861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93563 -37.85161 -36.52231 -35.07966 -32.66690 -31.15487 -27.93887 -26.61205 -24.12063 -23.42343 -22.63480 -21.94730 -20.50127 -19.02271 -17.12166 -16.66603 -16.46405 -15.95970 -15.67185 -15.13331 -14.74957 -14.14528 -13.49479 -13.44585 -13.16316 -12.89210 -12.71214 -12.51207 -12.36483 -12.21402 -12.06338 -11.78708 -11.62553 -11.33475 -11.28401 -11.13639 -10.57112 -10.22664 -9.34425 -8.28691 -6.16765 0.99121 1.43926 1.45044 1.58696 1.99715 2.32795 2.35800 2.99843 3.53475 3.76320 3.89455 3.96244 4.10677 4.19592 4.27333 4.42881 4.52676 4.60882 4.80894 4.87891 4.98448 5.08926 5.11361 5.12711 5.26114 5.29775 5.37627 5.38274 5.51755 5.61122 6.42878 6.47506 6.91307 7.11891 8.28872 8.71549 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.008931 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.455484 B = 3134.362563 C = 3717.389120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.119 3.881 4 N -0.356 5.356 5 N -0.179 5.179 6 N -0.287 5.287 7 C 0.108 3.892 8 C -0.473 4.473 9 H 0.093 0.907 10 C 0.017 3.983 11 N -0.832 5.832 12 Si 0.986 3.014 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.250 1.250 16 C -0.055 4.055 17 C -0.075 4.075 18 C -0.155 4.155 19 C -0.158 4.158 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.271 0.729 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.492 0.215 8.858 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C -0.002 4.002 4 N -0.149 5.149 5 N -0.153 5.153 6 N -0.155 5.155 7 C -0.025 4.025 8 C -0.510 4.510 9 H 0.112 0.888 10 C -0.196 4.196 11 N -0.461 5.461 12 Si 0.807 3.193 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.174 1.174 16 C -0.190 4.190 17 C -0.095 4.095 18 C -0.192 4.192 19 C -0.196 4.196 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.356 0.202 7.021 14.213 hybrid contribution 0.998 -0.128 0.677 1.213 sum -11.358 0.074 7.698 13.721 Atomic orbital electron populations 1.21649 0.91514 1.03110 1.03216 1.21821 0.98631 0.94776 1.01688 1.22121 0.73558 0.99503 1.05033 1.49998 1.07701 1.52284 1.04966 1.81355 0.96083 1.28650 1.09256 1.75029 1.08990 1.17839 1.13685 1.19591 0.93295 1.01420 0.88174 1.18903 0.88926 1.48846 0.94335 0.88848 1.26800 1.03883 0.92780 0.96093 1.70196 1.26193 1.38085 1.11645 0.85160 0.76224 0.79222 0.78699 1.19146 1.20487 1.17355 1.21331 0.90207 1.17460 0.90029 1.19950 1.05990 0.96026 0.87529 1.23119 0.92103 1.00713 1.03288 1.22902 0.97863 0.98638 1.00149 0.91760 0.91335 0.90570 0.93839 0.92124 0.86741 0.89130 0.91912 0.86616 0.89682 0.84966 0.86127 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.13 -3.53 6.26 30.59 0.19 -3.33 16 3 C 0.12 3.69 6.29 86.38 0.54 4.23 16 4 N -0.36 -16.06 3.63 -331.64 -1.20 -17.26 16 5 N -0.18 -10.01 13.74 37.02 0.51 -9.50 16 6 N -0.29 -18.03 10.58 -52.52 -0.56 -18.59 16 7 C 0.11 6.31 6.71 39.67 0.27 6.57 16 8 C -0.47 -26.90 9.16 23.43 0.21 -26.69 16 9 H 0.09 4.85 7.47 -2.91 -0.02 4.82 16 10 C 0.02 0.97 5.49 85.18 0.47 1.44 16 11 N -0.83 -50.71 11.94 21.79 0.26 -50.45 16 12 Si 0.99 41.80 29.56 68.60 2.03 43.83 16 13 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 14 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 15 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 16 C -0.05 -2.59 6.54 42.26 0.28 -2.31 16 17 C -0.07 -2.60 5.71 -11.54 -0.07 -2.66 16 18 C -0.16 -3.91 8.90 30.59 0.27 -3.63 16 19 C -0.16 -4.81 9.96 30.59 0.30 -4.51 16 20 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 21 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 22 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.11 2.87 5.34 -2.39 -0.01 2.86 16 26 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 27 H 0.27 15.23 8.30 -92.71 -0.77 14.46 16 28 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.08 2.21 6.96 -2.39 -0.02 2.19 16 30 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 32 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -75.48 275.19 5.33 -70.16 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.11 Total: 14.41 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 3.18 Total: -32.59 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -0.99 Total: -95.80 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -75.48 5.33 -70.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.805 kcal (2) G-P(sol) polarization free energy of solvation -75.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds